| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1273 |
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| Symbol | |
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| ID | 6183898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1103223 |
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| End bp | 1104305 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671842 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001798015 |
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| Protein GI | 171463902 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGAC GTTCATTTTT AAAGAAGGCC ACTATTGGTG CTAGTGCTGC AGCACTAGCT
GCACCATCAC TTGCGCAAAA TTTGCCAACC TTAAATTGGC GCTTGGTATC GAGCTTCCCA
AAATCATTGG ATACTTTATT CGGTACCCCC GAAGTATTTG CTAATGCCTT GCGTAAGGCA
ACCGATGGCA AATTTAATGT CAAAGTGTTT GCAGCTGGTG AGGTTGTCCC TGCCCTCCAA
GTGTTGGATG CGGTACAAAA CGGTACGGTA GAGTGCGGAC ATACAGCGAG TTATTACTAT
CTTGGTAAAA ATAGCGCCTT TATCTTTGAC ACCGCCGCTC CATTTGGGAT GACTACCAGA
CAGCAATCCG CTTGGATATT GCATGGCAAT GGTATGAAGT TAATGCGTGA GCTTTATGCG
AGCTACAACA TAGTGAATTT TCTGGGCGGA CAAACTGGCG CGCAAATGGG TGGCTGGTTT
CGCAAGGAAA TTAAATCTCC AGAAGATTTA AAGGGTCTGA AATTCCGTAT CGCTGGTTTT
GCGGGGCAGG TGCTCGCAAA ATTAGGGGTT GTTCCGCAAC AACTTCCTGC TGGTGAAATC
TATTCAGCGT TAGAAAAAGG TACGATTGAT GCTGCTGAGT TTGTTGGCCC TTACGATGAT
GAGAAATTGG GTCTTGCAAA GGTAGCTAAA AATTATTACT ACCCAGCCTT CTGGGAAGGT
GCTGCCGGAC TTTCTTTCTT GGTTAATAAG AAGCAGTGGG ATTCCTTGCC ACCCGCTTAC
CAAGCAGCAT GGGAGGCTGC CTGTTTTGAG GCGCATACCG ATATGTGTGC AAAATACGAT
GCGCTGAATC CACCTGCATT ACAACGCCTC CTTCAGGGTG GTGCCGTACT GCGTAAGTTC
AATACCACGA TCTTGGATGC GTGTTTTAAG GCCAGTCAAG AAACTTATGC GGAGGAGTCT
GCGAAGAATC CTCAATTTAA AAAGATTTTT GATGACTACC GTGCCTTCAG AAATATGGAG
GCTCAGTGGT TTAATGTGGC TGAACAGGCC TTTGCACAAT ACAGCTTTAA CAAGAAACTT
TGA
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| Protein sequence | MQRRSFLKKA TIGASAAALA APSLAQNLPT LNWRLVSSFP KSLDTLFGTP EVFANALRKA
TDGKFNVKVF AAGEVVPALQ VLDAVQNGTV ECGHTASYYY LGKNSAFIFD TAAPFGMTTR
QQSAWILHGN GMKLMRELYA SYNIVNFLGG QTGAQMGGWF RKEIKSPEDL KGLKFRIAGF
AGQVLAKLGV VPQQLPAGEI YSALEKGTID AAEFVGPYDD EKLGLAKVAK NYYYPAFWEG
AAGLSFLVNK KQWDSLPPAY QAAWEAACFE AHTDMCAKYD ALNPPALQRL LQGGAVLRKF
NTTILDACFK ASQETYAEES AKNPQFKKIF DDYRAFRNME AQWFNVAEQA FAQYSFNKKL
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