| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1245 |
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| Symbol | |
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| ID | 6183556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1076729 |
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| End bp | 1078492 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641671819 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001797993 |
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| Protein GI | 171463880 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCTC AAGACCGTAC CGCCTTAAAT CGCTTAATTA CCTACCTTAA GCCCCATATT
GGCTTGATTA TTGGGTCTTT ATTGGCCATG GCTGTAGTTG CCGCCGCCGA GACTTCCATC
CCAGCCCTAA TGAAGCCCTT ATTGGACCGC GGCCTTACCG GTCAGCTCAA TAGCAAACTT
TGGCAAGTGC CGGTTTTTTT GGTGGGCCTG GCTTTAGTCC GTAGTTTGGC GCAATTTCTA
TCGAGTTATT TGCTCACTAG GGTGATTAAC TCTGTGCTCT TGAAGTTACG GGGGCAAATG
TTTCAAACGC TATTGCACGC TAGCACTACT TTTTTCCAGA AAAACTCTGC ATCTACATTA
ATTAACGGTG TTGTGTTTGA AGTAAACAAT GTACTCACAG TGATGGGTGG AATGTTAATC
AGCTTGGTTA GGGATTTTCT TACTGTGGTT GGATTGATTG GATATTTGAT TTATCTCAAC
TGGCAATTAA CCTTAGTGGT CTTAATTATT TTCCCCGTGA TTGCATTCAT CATGAGCAAA
ATTAATCGCC GCTTAAGATC GCTTAACCGC GAACAGCAAA CGCTTACTAG TGATCTTGCT
TATATTGTTG AAGAAGCAGC AGCTGGCTAT AAGATTGTCA AAGTACATGG CGCCGAAGAA
TATGAAATGG GCCGCTTTCA ACAAAAGGCT GAGCGTTTGC GTCAATTTGC CTTGAAGTCT
GCGGTTGCAG GCGGCTTAAA CCAACCGATT ACTCAATTGA TTGCCTCAAT GGCCTTGTCA
GTAGTTCTGG TGATTGCTTT GATGCAATCA GCCACAGAAG GTGCGACTGT AGGGGGTTTT
GCGGCTTTTA TTACTGCGAT GATGTTGGTG ATTTCGCCGC TGAAGCATCT GGCAGATATA
AATCAACCTC TGCAGCGTGG ACTCACTGCT GCAGAAATGA TTTTTGGATT GATGGATCAG
CCCTTTGAAG AGAATGAGGA TCGCAAGCAA ATTATGAAGT CGCTTGACAA GACCAAAGGC
GGAATTCGAT TTGAGAATGT TGGGTTTTCA TATGAGCAAG AGGGCGATCG TAAAGATGCC
CTCAGCAATA TCAATCTCAC CATTAAGCCT GGCGAAGTCG TTGCATTTGT GGGCCCATCG
GGTGGCGGTA AATCCACTCT CGTTAATTTA CTACCCCGTT TTTACAAGCC CAGCACTGGC
CATATTTTCT TGGACAACAT TCCTTTAGAA GAGATCGTAT TGGCTGATGT ACGGCGCCAA
ATTGCTTTTG TAAGCCAAGA TGTCATCCTC TTTAACGATA CGATTGCTGC TAACGTAGCT
TATGGCGCTA GCGATCAAGC TGGTATCGAC CGCAGTCGTG TCATGGAAGC ATTAGAGGCT
GCAAATCTGA GCGCCTTAAT TAAGGAGCTG CCAGAGGGTA TTGACTCCAT GGTGGGGGAT
AACGGCAACC GCTTATCTGG TGGCCAGCGT CAGCGCCTTG CTATTGCCCG TGCTATCTAT
AGAGATGCTC CAATTCTGAT CTTGGATGAG GCAACCTCAG CCTTGGATTC TGAATCTGAG
CGCCAAGTTC AAGAGGCACT AGATACTTTA ATGGCTAATA GAACAACGTT AGTGATTGCG
CATCGCTTGT CTACTATTGA GCATGCCGAT CGCATTGTCG TGTTAGAGTA TGGCAAGATT
ATTGAAAATG GCTCACACGA AGATTTAATC AAGCAAGATG GACTATATGC CAACTTGCAT
CGCATTCAGT TTTCAAACGC CTAA
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| Protein sequence | MNAQDRTALN RLITYLKPHI GLIIGSLLAM AVVAAAETSI PALMKPLLDR GLTGQLNSKL
WQVPVFLVGL ALVRSLAQFL SSYLLTRVIN SVLLKLRGQM FQTLLHASTT FFQKNSASTL
INGVVFEVNN VLTVMGGMLI SLVRDFLTVV GLIGYLIYLN WQLTLVVLII FPVIAFIMSK
INRRLRSLNR EQQTLTSDLA YIVEEAAAGY KIVKVHGAEE YEMGRFQQKA ERLRQFALKS
AVAGGLNQPI TQLIASMALS VVLVIALMQS ATEGATVGGF AAFITAMMLV ISPLKHLADI
NQPLQRGLTA AEMIFGLMDQ PFEENEDRKQ IMKSLDKTKG GIRFENVGFS YEQEGDRKDA
LSNINLTIKP GEVVAFVGPS GGGKSTLVNL LPRFYKPSTG HIFLDNIPLE EIVLADVRRQ
IAFVSQDVIL FNDTIAANVA YGASDQAGID RSRVMEALEA ANLSALIKEL PEGIDSMVGD
NGNRLSGGQR QRLAIARAIY RDAPILILDE ATSALDSESE RQVQEALDTL MANRTTLVIA
HRLSTIEHAD RIVVLEYGKI IENGSHEDLI KQDGLYANLH RIQFSNA
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