| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1204 |
|---|
| Symbol | |
|---|
| ID | 6183974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1042010 |
|---|
| End bp | 1044277 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671787 |
|---|
| Product | Lysine decarboxylase |
|---|
| Protein accession | YP_001797963 |
|---|
| Protein GI | 171463850 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000000345453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.552697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTC GTTTCCCAAT CATCATTATT GATGAAGACT TCCGCTCCGA AAATATTTCG
GGCTCGGGAA TTCGTGACCT CGCCGAGGCG ATAGAGAATG AAGGTGTGGA GGTTATTGGC
TTAACTAGCT ATGGCGACCT TACTTCTTTT GCCCAACAGG CTTCTCGCGC ATCTACTTTC
ATTGTTTCGA TTGACGACGA AGAATTCGAT TCTGATTCTG AAGATCATGA TCTTCCTGCT
TTAAATAATT TGCGTGCTTT TATTACTGAA GTTCGTAAGC GTAATGAAGA TATTCCAATC
TTCTTGTACG GCGAGACACG CACATCACGT CATATGCCAA ATGACATCTT GCGTGAGCTG
CATGGTTTCA TTCATATGAA TGAAGACACT CCGGAGTTTG TAGCGCGTCA CATCATTCGT
GAAGCAAAAG TGTATTTAGA CTCTCTAGCA CCACCATTCT TCCGCGCATT AACCAATTAC
GCCTCAGAAG GCTCTTATTC ATGGCACTGC CCTGGTCACT CTGGTGGTGT TGCCTTCCTA
AAGAGCCCAG TGGGCCGTAT GTTCCACCAG TTCTTTGGTG AAAACATGCT TCGTGCCGAC
GTATGTAATG CTGTTGAAGA GCTGGGTCAG CTCTTAGATC ACACTGGCCC AGTGTTGCAG
AGTGAGCGCA ATGCTGCGCG CATCTTTAAT GCCGACCATT TGTTCTTTGT AACCAATGGT
ACCTCTACGT CTAATAAGAT TGTTTGGCAC TCCACCGTTG CTCCTGGCGA CGTTGTATTG
GTAGACCGTA ACTGTCATAA GTCTGTGATT CATTCCATCA CGATGATGGG GGCGATTCCA
ATTTTCTTGA TGCCTACCCG TAATCACTTG GGCATTATTG GTCCAATTCC AAAGGAAGAG
TTTGAATGGA AAAACATTAA GAAGAAAATT GATGTCAATC CGTTTATTAA AGATAAGAAT
GTTGTGCCAC GCGTCATGAC TTTGACTCAA AGCACTTATG ACGGTATTGT TTACAACGTC
GAGATGATCA AAGAGATGCT CGATGGTAAA GTGGACTCAC TTCACTTTGA TGAGGCTTGG
TTGCCCCATG CTGCTTTCCA TCCTTTCTAT AAGGATATGC ACGCCATTGG CTCAGATCGC
AAGCGCACCA AGAAGAGCTT GATGTTTGCA ACACAATCTA CACATAAGTT ATTGGCTGGT
CTATCTCAAG CTTCACAGGT ATTGGTGCAG GATGCTGAAG ATGCCAAACT AGACCGTGAC
TGCTTCAATG AAGCTTATTT GATGCACACC TCAACGAGTC CTCAGTATGC AATTATTGCC
TCCTGCGATG TGTCTGCTGC GATGATGGAA TCTCCCGGCG GCACCACTCT AGTTGAGGAA
TCGATTGCCG AAGCAATGGA CTTCCGCCGT GCGATGCGTG AAGTAGATGA TAAGTTTGGC
GCCGATTGGT GGTTCAAGGT TTGGGGTCCA GATCACTTGG CTGAAGAGGG CATTGGTGAG
CGTTCGGACT GGGTCTTGGA GCCTTCCGCT CCTTGGCATG ATTTTGGTAA GTTGGCCAAA
GATTTCAATA TGCTTGATCC CATTAAGGCG ACCGTAGTTA CGCCTGGCTT AGATATTGAA
GGCAACTTTG GTTCTATGGG TATTTCGGCC AGCATTGTTA CTAAGTACCT TGCTGAGCAT
GGCGTGATCG TAGAGAAGTG CGGCTTGTAC TCATTCTTCA TCATGTTTAC TATCGGCATT
ACTAAGGGCC GTTGGAACAC GCTCGTAACA GAGCTACAAC AATTTAAAGA TCACTTTGAT
AAAAATGCAC CTTTGTGGAA AGTGTTGCCT GAGTTTGTGG CCAAACATCC ACGCTATGAA
CGCGTTGGTT TAAAGGATAT CTGTCAGCAA ATTCATGAGT TCTACAAGAG TCGTGACGTA
GCCCGCATGA CTACCGAGAT GTATACCTCC GATATGATTC CCGCCATGAT GCCTTCTGAG
GCGTGGGCGA AGATGGCTCA CAAACAGGTA GACCGTGTGC CACTAGATCG ACTAGAAGGA
CGCGTTACTG CGATGTTGGT TACACCATAC CCCCCAGGCA TTCCGCTACT CATACCGGGT
GAGCGCTTTA ATAAGCGTAT TATTGACTAT CTCTACTTCG CTAGAGACTT CAATGAGAAG
TTCCCTGGGT TTGAGACGGA TATTCATGGA CTCGTTAAGA CTAGTGTTGA TGGGAAGAGT
GAATACTACG TTGACTGTGT TAGACAAGAG CGTGACATTA CTCTGTGA
|
|---|
| Protein sequence | MKFRFPIIII DEDFRSENIS GSGIRDLAEA IENEGVEVIG LTSYGDLTSF AQQASRASTF
IVSIDDEEFD SDSEDHDLPA LNNLRAFITE VRKRNEDIPI FLYGETRTSR HMPNDILREL
HGFIHMNEDT PEFVARHIIR EAKVYLDSLA PPFFRALTNY ASEGSYSWHC PGHSGGVAFL
KSPVGRMFHQ FFGENMLRAD VCNAVEELGQ LLDHTGPVLQ SERNAARIFN ADHLFFVTNG
TSTSNKIVWH STVAPGDVVL VDRNCHKSVI HSITMMGAIP IFLMPTRNHL GIIGPIPKEE
FEWKNIKKKI DVNPFIKDKN VVPRVMTLTQ STYDGIVYNV EMIKEMLDGK VDSLHFDEAW
LPHAAFHPFY KDMHAIGSDR KRTKKSLMFA TQSTHKLLAG LSQASQVLVQ DAEDAKLDRD
CFNEAYLMHT STSPQYAIIA SCDVSAAMME SPGGTTLVEE SIAEAMDFRR AMREVDDKFG
ADWWFKVWGP DHLAEEGIGE RSDWVLEPSA PWHDFGKLAK DFNMLDPIKA TVVTPGLDIE
GNFGSMGISA SIVTKYLAEH GVIVEKCGLY SFFIMFTIGI TKGRWNTLVT ELQQFKDHFD
KNAPLWKVLP EFVAKHPRYE RVGLKDICQQ IHEFYKSRDV ARMTTEMYTS DMIPAMMPSE
AWAKMAHKQV DRVPLDRLEG RVTAMLVTPY PPGIPLLIPG ERFNKRIIDY LYFARDFNEK
FPGFETDIHG LVKTSVDGKS EYYVDCVRQE RDITL
|
|---|
| |