| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1160 |
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| Symbol | |
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| ID | 6183347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1004951 |
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| End bp | 1005634 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671757 |
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| Product | outer membrane lipoprotein carrier protein LolA |
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| Protein accession | YP_001797933 |
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| Protein GI | 171463820 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
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| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.0682728 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAAGAT TTCTAATTTC AGCAATTCTT GCGATTGCAA ACATTCTGTT TTCAGGCACA
GCACTTTCGC AATCAGAGAG TGGTGCTGAG CAATTACGTC AATTTGTGCG TAATTCTAAA
ACTGCCGAAG GTGACTTTAT TCAACAACAG TTGCGTGCAC CTAAAGCGAA CGAGCCGCAG
GACAAGGGCC TAAAGGTAGT GCGTCAAACG CAGGGTCATT TTGTATTTCA GCGTCCAGGC
AGATTTATAT GGGATACCCA AAAACCTTAC GAGCAAAAGT TAGTTGCTGA TGGCAAACAA
TTAATCCTGT GGGATAAGGA TTTAAATCAA GCAACCTTGC GTCCTGCAGG ACAGGCTTTG
GCCTCTACGC CAGCAGCCAT TCTGTTTGGC GAAACCTCAC TGGAGCAGCA CTTTGATCTA
GTGGAGGGTG AAGAGCGCTT AGGAATGAAG TGGGTTTCCC TGATCCCTAA AAGGGATCCC
GGCGCAAAGA ATAAAAATGA TCTTCCGTAT ACGAAGGTCT CGATTGGTAT GGCCAATGGA
TTGCCTAAGG CGCTTGAGTT AACCGATGGA CTTGGAAGCG TAGTTTTGGT TGCTTTGGAT
AAGATCCAGC TCAATGTCAA TTTGCCAGCC AATCGCTTTA CCTTCACCCC GCCATCCGGG
GCAGAAGTCT TGCGCTTAAA CTAG
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| Protein sequence | MSRFLISAIL AIANILFSGT ALSQSESGAE QLRQFVRNSK TAEGDFIQQQ LRAPKANEPQ
DKGLKVVRQT QGHFVFQRPG RFIWDTQKPY EQKLVADGKQ LILWDKDLNQ ATLRPAGQAL
ASTPAAILFG ETSLEQHFDL VEGEERLGMK WVSLIPKRDP GAKNKNDLPY TKVSIGMANG
LPKALELTDG LGSVVLVALD KIQLNVNLPA NRFTFTPPSG AEVLRLN
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