Gene Pnec_1083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1083 
Symbol 
ID6183611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp940081 
End bp940968 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content48% 
IMG OID641671694 
Productprotein of unknown function DUF6 transmembrane 
Protein accessionYP_001797871 
Protein GI171463758 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.427238 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value0.445197 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTCT CGTTGGATAA CGCAATTGCC CCAATATTTG TGCTTATTTG GAGTACGGGT 
TTCGTGATTG CTCGTTTAGC CATGCCTTAT GTTGAGCCGG CAACCTTTTT GTTTTGGCGG
TTTGCAGGGG TATTAGTGGC CATGGCAGCG TTGAGTTTAG TGTGGAGAAT CACCTGGCCC
AGCTGGTCTC AAATCAAGCA TATAGCGGTT GCAGGGATCT TACTTCAGTT TGGATATTTA
CTGGGCGTGT GGTTTGCTGT CCGATTGGGG ATGACGGCAG GGTTGGTGGC CATCATTGTT
GGGCTTCAGC CGATTGTGAC CGCCTGGTTT GCTGCCTGGA TATCTGAGAA GGTGACACCG
CGTCAATGGG TTGGCTTGGG ATTTGGTTTT GTTGGTGTTG CTCTGGTGGT TGCTGAAAAG
ATTAGTTTTG CGCATATTCC GGTTGCAAGT TATATCTTGG CGTTTATTGC GCTTCTCTCC
ATTACGTTTG GCACCCTGTA TCAGAAGAAA TTCTGTCCAG TATTTGATCT TCGCGCTGGC
TCCTCTATTC AGTTTGGCGT TTCTGCAGTG CTTTGCTTCC TGTGTATGTA TTTATTTGAA
TCAGGGGAGA TGGTATGGAA TCCCTCTGTG ATTGGCGCTT TGCTTTGGGC TATCTTCCCG
TTATCTATCG GATCCATTAG CTTGCTATTT ATGATGATTC GCAAAGGGGC GGCAACCAAG
GTAACTAGCT TGCTGTATCT AACGCCACCT ACAACTGCAG TGATGGCTTG GCTATTGTTT
GATGAGCCGT TCACATTATT GATGGCTGTT GGCTTGTGTT TGACGATGAC GGGTGTGGTG
CTGGTAAATG CACGTCAGGC CAATAGTGTA GCAACCATTG CGGAGTAG
 
Protein sequence
MKLSLDNAIA PIFVLIWSTG FVIARLAMPY VEPATFLFWR FAGVLVAMAA LSLVWRITWP 
SWSQIKHIAV AGILLQFGYL LGVWFAVRLG MTAGLVAIIV GLQPIVTAWF AAWISEKVTP
RQWVGLGFGF VGVALVVAEK ISFAHIPVAS YILAFIALLS ITFGTLYQKK FCPVFDLRAG
SSIQFGVSAV LCFLCMYLFE SGEMVWNPSV IGALLWAIFP LSIGSISLLF MMIRKGAATK
VTSLLYLTPP TTAVMAWLLF DEPFTLLMAV GLCLTMTGVV LVNARQANSV ATIAE