| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1061 |
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| Symbol | |
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| ID | 6183334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 923162 |
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| End bp | 924940 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641671673 |
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| Product | succinate dehydrogenase, flavoprotein subunit |
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| Protein accession | YP_001797850 |
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| Protein GI | 171463737 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.760541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.0367901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCAA TTAAAAAATC ATTGCCACGC CGCCGTTTTG ATGCGGTGAT TGTTGGAGCT
GGTGGCTCGG GTATGCGTGC ATCATTGCAG TTGGCTGAAG CTGGCTTGAA TGTTGCCGTT
CTTACAAAAG TATTTCCAAC ACGTTCACAT ACTGTTGCCG CACAAGGTGG TATCGGTGCT
TCATTGGGCA ATATGAGTGA AGATAATTGG CACTATCACT TCTATGACAC CATTAAGGGT
TCTGACTGGT TGGGTGACCA AGACGTGATC GAATTTATGT GTCGCGAAGC TCCTAAAGCA
GTTTATGAGT TAGAGCATTT CGGAATGCCG TTTGACCGTA ACCCGGATGG TACGATTTAT
CAGCGTCCAT TCGGTGGTCA CACAGCAAAC TACGGCGAAA AGCCAGTGCA ACGTGCTTGC
GCGGCAGCTG ACCGTACCGG TCATGCAATG TTGCACACTT TGTATCAACG TAACGTGCGT
GCCAAAACCA ATTTCTTTGT CGAGTGGTTG GCGCTTGACT TGATCCGTGA TGATGCTGGT
GATGTAGTTG GTGTTACCGC TCTCGAAATG GAAACGGGTC AGGTATACAT TCTTGAGGCC
AAAGTAATTC TCTTGGCAAC CGGCGGTGCT GGCCGTATTT GGGACGCATC AACAAACGCA
TTTATTAATA CCGGCGACGG TATGGGCTTA GCTGCTCGCG CAAGCATTCC ATTGGAAGAC
ATGGAGTTCT GGCAATTTCA CCCAACTGGC GTAGCCGGAG CGGGCGCGTT ATTAACAGAA
GGTTGCCGCG GTGAAGGTGG CATCTTGCGT AACAAAGATG GCGAGCGTTT CATGGAGCGT
TATGCACCAA CATTGAAAGA TTTGGCTCCA CGCGATTTCG TATCTCGCTC AATGGACCAA
GAAATTAAAG AAGGACGCGG TTGCGGTCCT AATGGCGACT ATGTTGTGCT CGATTTAACA
CACATTGGTG CTGATACCAT CATGAAGCGT CTGCCTTCTG TGTATGAGAT TGGCATCAAC
TTTGCTAATG TTGACGTTAC TAAAGAGCCA ATCCCAGTTG TCCCAACGAT TCACTATCAG
ATGGGCGGTA TTCCTACCAA CATCAATGGT CAGGTTGTTG TGCCGGCAAA CGGTATTCAC
AATGAAGTTA TCAATGGTTT ATATGCGATC GGTGAGTGTT CATGTATTTC TGTTCACGGT
GCAAACCGTT TAGGCACTAA CTCATTGCTC GACTTGTTGG TGTTCGGTCG TGCGGCAGGC
AACCACATCG TTGGTCTTGA TCTTAAGAAT CGCGAATTCA AGCCATTGCC TGCAAATGCA
GGCGAACAAA CATTGGCATG TATTGCTGCG CTCGATAACT CCACTTCTGG TGAGTACGCG
CAAGATGTGG CAAACGACAT TCGCAAGTGC ATGCAGAAAT ATGCTGGCGT GTTCCGCAAT
CAAGAGTTGA TGGATGAAGG TGTTCGTCAA ATGGCTAAAT TGACCGAGCG CGCCAAGCAC
TTATGGGTTA AAGACAAATC CGAGATTTTC AATACGGCAC GTATTGAAGC TTTGGAAGTG
GCTAACTTGG TTGAGACTGC AAACGCAACA ATGACTTCTG CTGCAGCTCG CAAAGAAAGT
CGTGGCGCTC ATTCGCATGA TGATCACCCA CATCGTGATG ATGAAAACTG GATGAAACAT
ACTCTTTGGT ATAGCGAAGG CAATCGTTTG GACTACAAGC CAGTCCAATT GAAACCATTG
ACTGTTGATT CAGTTCCTCC AAAAGAACGT ACTTTCTAA
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| Protein sequence | MTAIKKSLPR RRFDAVIVGA GGSGMRASLQ LAEAGLNVAV LTKVFPTRSH TVAAQGGIGA
SLGNMSEDNW HYHFYDTIKG SDWLGDQDVI EFMCREAPKA VYELEHFGMP FDRNPDGTIY
QRPFGGHTAN YGEKPVQRAC AAADRTGHAM LHTLYQRNVR AKTNFFVEWL ALDLIRDDAG
DVVGVTALEM ETGQVYILEA KVILLATGGA GRIWDASTNA FINTGDGMGL AARASIPLED
MEFWQFHPTG VAGAGALLTE GCRGEGGILR NKDGERFMER YAPTLKDLAP RDFVSRSMDQ
EIKEGRGCGP NGDYVVLDLT HIGADTIMKR LPSVYEIGIN FANVDVTKEP IPVVPTIHYQ
MGGIPTNING QVVVPANGIH NEVINGLYAI GECSCISVHG ANRLGTNSLL DLLVFGRAAG
NHIVGLDLKN REFKPLPANA GEQTLACIAA LDNSTSGEYA QDVANDIRKC MQKYAGVFRN
QELMDEGVRQ MAKLTERAKH LWVKDKSEIF NTARIEALEV ANLVETANAT MTSAAARKES
RGAHSHDDHP HRDDENWMKH TLWYSEGNRL DYKPVQLKPL TVDSVPPKER TF
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