| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1060 |
|---|
| Symbol | |
|---|
| ID | 6183549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 922441 |
|---|
| End bp | 923145 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671672 |
|---|
| Product | succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| Protein accession | YP_001797849 |
|---|
| Protein GI | 171463736 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
|---|
| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.564724 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.0724553 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATA TCCGTATATT CGAAATTTAC CGCTACGATC CAGACGTCGA TGCTGCTCCA
CGCATGCAGC GCTATGAGCT AGAGCTTACT GGCGAGCGCA TGTTATTGGA CGCGTTGATT
TCTTTAAAGA AACAGGACGA GACTATTTCT TATCGTCGCT CATGCCGTGA GGGTGTGTGC
GGATCAGATG CGATGAACAT CAACGGTAAA AATGGTTTGG CCTGTTTGAC TAATATGTTG
ACTTTACCTA GGGTCATTAC ATTGCGCCCA TTGCCTGGTT TGCCAGTTGT GCGCGATTTG
ATCGTTGACA TGACTTTGTT CTTTAAACAA TATTTGTCTA TCAAGCCATA CTTGGTAAAC
GAAAATCTAC CTCCTGATAA AGAGCGTCTC CAGAGTCCTG AGGAGCGTGA AGAGTTGAAT
GGTTTGTATG AGTGCATCTT GTGCGCATCC TGCTCAACTT CTTGTCCATC ATTCTGGTGG
AATCCGGACA AGTTCGTTGG CCCAGCCGGC TTATTACAAG CATATCGCTT TATTGCCGAC
AGTCGTGATG AAGAAACTGC GCAGCGTTTG GATAACTTGG AAGATCCATA TCGCTTGTTC
CGTTGCCATA CCATTATGAA TTGCGTTGAC GTATGTCCTA AGCACTTGAA CCCAACGAAG
GCAATTGGCA AGATCAAGGA GCTGATGGTT CGTAGGGCGG TATGA
|
|---|
| Protein sequence | MSDIRIFEIY RYDPDVDAAP RMQRYELELT GERMLLDALI SLKKQDETIS YRRSCREGVC
GSDAMNINGK NGLACLTNML TLPRVITLRP LPGLPVVRDL IVDMTLFFKQ YLSIKPYLVN
ENLPPDKERL QSPEEREELN GLYECILCAS CSTSCPSFWW NPDKFVGPAG LLQAYRFIAD
SRDEETAQRL DNLEDPYRLF RCHTIMNCVD VCPKHLNPTK AIGKIKELMV RRAV
|
|---|
| |