| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1054 |
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| Symbol | |
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| ID | 6182952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 917359 |
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| End bp | 918429 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671666 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_001797843 |
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| Protein GI | 171463730 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.347892 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTG CAGTCCTGCC GGGCGATGGT ATCGGCCCGG AAATCGTTGC TCAAGCCGTT
CGAGTGCTCC AAGCGCTTGG CCCAGAGTTT GATTTAGAAG AAGCTCCAGT TGGTGGCGCT
GCCTATGATG CGGCAGGCCA TCCTTCGCCG CCGGCTACTT TAGAGTTGGC TAAAAAAGCA
GATGCCATTT TGTTTGGTGC AGTTGGCGAC TGGAAATACG ATACGCTTGC ACGCGAGCTG
CGTCCAGAGC AAGCAATTCT AGGTTTGCGT AAACACCTTG AATTGTTTGC CAACTTCAGA
CCAGCGATTT GCCATCCAGA ACTCACGGCC GCATCGAGCC TCAAGCCAGA AATTATCGGC
GGCTTAGATA TTCTGATTGT GCGCGAGCTC AATGGCGATA TTTACTTTGG TCAACCGCGC
GGTATTCGTA CTTCAGAGTT GCCCTTATTT AAAGGTGCTC GCGAAGGTTT TGACACCATG
CACTATAGCG AGCCAGAAGT AGAGCGTATT GGTCGGGTTG CTTTCGAAGC AGCGCGTAAG
CGCAGTAAAA AAGTATGTAG CGTTGATAAG GCCAACGTAC TAGAGACTTC ACAGCTTTGG
CGTGAGGTGA TGATTCGTAT TGCCAAAGAA TATCCGGATG TTGAGTTATC TCATATGTAT
GTGGATAACG CTGCAATGCA ATTGGTCAAA GCACCTAAAG CATTTGATGT TGTAGTAACC
GGAAATTTAT TCGGTGACAT TCTGTCCGAC GAAGCGGCGA TGTTGACTGG CTCCATTGGT
ATGTTGCCAT CTGCCTCTTT GGATAAAAAT AATAAAGGCT TGTATGAGCC AAGTCACGGC
TCCGCGCCTG ATATTGCTGG TAAAGGTATT GCTAATCCAT TGGCAACGAT TTTGTCTGCT
GCGATGATGT TGCGTTACTC CTTGGGTATG CCTGCTGAAG CAGATCGCAT TGAAAAGGCC
GTGCAAAAAG TATTGGCGCA AGGATTGCGA ACTGCCGATA TTTATACCGA AGGTACGAAA
AAGGTGTCTA CGGTTGAAAT GGGCGATGCT GTAGTTGCGG CGCTGGCTTA A
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| Protein sequence | MKIAVLPGDG IGPEIVAQAV RVLQALGPEF DLEEAPVGGA AYDAAGHPSP PATLELAKKA
DAILFGAVGD WKYDTLAREL RPEQAILGLR KHLELFANFR PAICHPELTA ASSLKPEIIG
GLDILIVREL NGDIYFGQPR GIRTSELPLF KGAREGFDTM HYSEPEVERI GRVAFEAARK
RSKKVCSVDK ANVLETSQLW REVMIRIAKE YPDVELSHMY VDNAAMQLVK APKAFDVVVT
GNLFGDILSD EAAMLTGSIG MLPSASLDKN NKGLYEPSHG SAPDIAGKGI ANPLATILSA
AMMLRYSLGM PAEADRIEKA VQKVLAQGLR TADIYTEGTK KVSTVEMGDA VVAALA
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