| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1048 |
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| Symbol | trpA |
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| ID | 6184055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 911117 |
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| End bp | 911914 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671660 |
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| Product | tryptophan synthase subunit alpha |
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| Protein accession | YP_001797837 |
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| Protein GI | 171463724 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0159] Tryptophan synthase alpha chain |
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| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 0.477219 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAAAAA TTACTGCGCT CTTCAAGGAG CTAAAAGCAA CGGGTAAAAA AGGATTGATT
CCTTTTATTG CTGCAGGCGA TCCTGATCCC AAGCAAACGG TTGAATTAAT GCATGCATTA
GTGCGCGGCG GCTCAAGTGT GATTGAATTA GGCGTGCCTT TTTCAGATCC CATGGCTGAT
GGTCCTGTCA TTCAACGATT ATCTGAGCGA GCATTAACGC ATGGCGTCAC TTTGCACAGT
TGTTTGGAAA TGGTGAAAGA GTTTCGTAAG AAAGATGCCA ACACACCAGT GGTCTTGATG
GGATACGCAA ATCCAGTGGA GCAAATGGGA GCGGAACGTT TCGCTACAGA AGCAAAGGCT
GCTGGCGTTG ATGGTGTTCT AGTGGTGGAT TGTCCACCGG AAGAGTGCGT TGATTTTGCA
GCTCGCATGC GCGTTGCTGG AATTGATCCG ATTTTCTTGT TGGCACCCAC TTCATCACAG
GAGCGTATTA AAGGGGCTGC CAAAATAGCG TCTGGTTATA TTTATTACGT TTCGATGCGT
GGCGTTACGG GCGCTTCTCA CCTTAATACC CAGGATGTGG CAAGCATCAT CCCGAAAATA
CGAGAAGAAA CCGATATTCC GATCGCGGTA GGCTTTGGAA TTAGCGATGC CGCTAGCGCC
AAGGCGGTGT CTACCAGCGC TGATGCCGTG GTGATTGGTA GCCAAATTAT TCGCCTTTTG
GAGGATGCAC CCTCTGGGCA GGCAGTACAA TCACTGGAAA CCTTCATTCG TGAGATTCGC
GACGCATTGG ATAGTTAA
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| Protein sequence | MSKITALFKE LKATGKKGLI PFIAAGDPDP KQTVELMHAL VRGGSSVIEL GVPFSDPMAD
GPVIQRLSER ALTHGVTLHS CLEMVKEFRK KDANTPVVLM GYANPVEQMG AERFATEAKA
AGVDGVLVVD CPPEECVDFA ARMRVAGIDP IFLLAPTSSQ ERIKGAAKIA SGYIYYVSMR
GVTGASHLNT QDVASIIPKI REETDIPIAV GFGISDAASA KAVSTSADAV VIGSQIIRLL
EDAPSGQAVQ SLETFIREIR DALDS
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