| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1042 |
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| Symbol | |
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| ID | 6183030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 904716 |
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| End bp | 905924 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671654 |
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| Product | O-succinylhomoserine sulfhydrylase |
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| Protein accession | YP_001797831 |
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| Protein GI | 171463718 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 0.37384 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGTA AAACTACACG CAAAAAACTG GATTTTTCTA AACTTGCACT CGAAACCATA
GCAGTTCGTG TAGGCACTCG TCGTACGGCT GAATATCAAG AGCACTCCGA GGCAATGTTC
CTCACATCAA GCTTTTGCTT TGATAGCGCC GAATTAGCGG CTGATGGCTT TGCTCATGCT
GATCAAGGTT TTATTTATTC ACGCTTTACC AATCCAACCG TGAGTATGTT CCAAGATCGC
TTGGCTGCTC TTGAGGGTGG CGAAGCTTGT ATTGCTACTG CCTCTGGTAT GTCTGCCATT
CTGACAATGG CAATGGCTCA CCTGCAAGCA GGTGATCACG TTATTTGCTC GCGTTCTGTA
TTTGGTGCAA CGATTCAGTT GTTCACGAAT ATTTTGGGTC GCTTTGGTAT TACGACAACT
TATGTTGATT TGACTGATAC TAAGTCATGG CAGGCTGCTG TCCAACCAAA CACCAAACTC
TTTTATCTAG AGACACCTTC CAATCCTTTG ACTGAGATTG CGGATATCAA AGCAATTTCA
AGGATAGCAA AAAAGGCAGG TGCCTTGTTT GCTGTAGATA ACTGCTTCTG CACTCCGGCA
TTACAAAAAC CATTGGCGCT TGGTGCTGAT GTTGTGATTC ATTCTGCAAC TAAGTATTTA
GATGGTCAGG GCAGGATGGT TGGTGGCGCC ATTGTAGGCA ACAAAGATTT CATTATGGGA
AAAGTGTTCC CTTATGTGCG TACTGCAGGC CCAACACTGT CAGCATTCAA TGCTTGGGTA
TTCTTAAAAG GCTTGGAGAC TCTAGAGCTT CGCATGAAGC AGCAGAGTCA AAATGCGCTT
GCCTTGGCTC AATGGTTGGA GAAGCAACCT GGCGTAGAAC GCGTGTACCA TCCAGGCCTG
AAAACGCACC CTCAACATGC CTTAGCTAAA CGCCAGCAAA AAGAGGGTGG GGCGATTCTA
TCTTTTACCC TCAAGGGTGG AAAGAAGGCG GCATTCAAAC TTATCAATCA AACCAAGCTC
TGCTCGATCA CTGCAAACTT AGGGGATACC CGCACAACAA TTACCCATCC AGCGACAACG
ACACATTGTC GCGTCAGTCC TGAAGCCAGA AAAGCAGCAG GCATATCCGA TGGATTGGTG
CGTATTGCAG TTGGCCTCGA GAATATCAGC GATTTAAAGA ACGACCTCCT TGGTGGACTC
AAAAAATAA
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| Protein sequence | MKSKTTRKKL DFSKLALETI AVRVGTRRTA EYQEHSEAMF LTSSFCFDSA ELAADGFAHA
DQGFIYSRFT NPTVSMFQDR LAALEGGEAC IATASGMSAI LTMAMAHLQA GDHVICSRSV
FGATIQLFTN ILGRFGITTT YVDLTDTKSW QAAVQPNTKL FYLETPSNPL TEIADIKAIS
RIAKKAGALF AVDNCFCTPA LQKPLALGAD VVIHSATKYL DGQGRMVGGA IVGNKDFIMG
KVFPYVRTAG PTLSAFNAWV FLKGLETLEL RMKQQSQNAL ALAQWLEKQP GVERVYHPGL
KTHPQHALAK RQQKEGGAIL SFTLKGGKKA AFKLINQTKL CSITANLGDT RTTITHPATT
THCRVSPEAR KAAGISDGLV RIAVGLENIS DLKNDLLGGL KK
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