| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0912 |
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| Symbol | |
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| ID | 6184099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 786094 |
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| End bp | 789639 |
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| Gene Length | 3546 bp |
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| Protein Length | 1181 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671542 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001797724 |
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| Protein GI | 171463611 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACG CATTAAATCT GGTACCCCCC ATACCCGCTC CCCGGGCTGG GCGGCGCTTT
ACCTTTTCGG GACTGATTGG GTCATCTGAT GCAGCCCTAA TTGCACAAAC CGCCCTTCGC
TATCGGGACA AATTCTCGGT AATGGTAATT TTCTGCGCTC AAGCACAGGA AGCGCAGCGC
CTACTGGAAG AGATTCCTGC TTTTGCACCA CAACTGAAAA CCAGACTCCT ACCCGATTGG
GAAATTCTTC CCTATGACCA CTTTTCACCT CATCAAGATT TAGTTTCTGA GAGGCTTGCC
ACTCTTTATG AGCTTCTCAA TGGAAGTTGT AACATTGTTT TAGTCCCCGT TACAACAGCT
CTACAGAGAT TGGGGCCCCC AAACTTTTTG GCAAGCCACA CCTTTTTCTT TAGGCAAGGT
GACAAACTTA ATGAGGCGGC TTTAAAGCTA CAATTACAAC AGGCAGGCTA TGACCCTGTG
AGCGCTGTGA TGCGCCCAGG TGAATATAGT ATTCGGGGGG GGTTGTTTGA TTTATTCCCC
ATGGGATCAA ATCTACCTTA TCGATTGGAT TTATTTGGTG ATGAGATAGA ACAGATTCGC
GCCTTTAATC CAGATACCCA GCGCAGCCTT TACCCCGTTA AGGAGGTTCG ACTGCTTCCG
GGCCATGAGT TTCCATTTGA TGATACCTCT CGTACGTCAT TCAGAGGGCG CTGGAGAGAG
GTATTTGAAG GCGACCCAAG TCGCTGCTCT ATCTATAAGG ATGCTAGCCT AGGAATTCCA
AGTGCCGGCA TTGAATCGTA CCTTCCACTT TTCTTTGAAG AAAATTCCAG CCTATTTGAT
TACCTCCCGA GATCAGGCGA TCCCGTCTGG CTTGTCAGCA TTGGTGATGT TGAAGAAACC
ATTAAGGGCT TTTGGAAGGA CACACTTTCA CGTTATGAGT TTCTCAAACA TGATTTAGAC
CGACCCATTC TTCCGCCTAA GGAATTATTT TTAGATGTTG ATGAATTCTT TTCAACCTCC
AAACCTTACG CTCGTTTATC GCTTGAAAAT GAAGCTGTTG AGAAGAATGA ATTTTTCGCG
GTTCCCGATA TTTCTGTTCA TCGTCGCGAT GCAGACCCCA TAAGTCGTTT AAGAAATGTA
GTTGCCTCTG AAAATGTACG TGTCCTCATT TGCAGTGATA GCGCTGGCAG AAAAGAATCT
ATTCGACAGC TATTTGATGA AAGTAATTCT GTAGCTAGCG TAGATGGCAA GTCTCTTTAT
TCGCTAAAGC CAGAAGGATT CGATAGTATC GCGGAATTTA TTAAGAGTGA ATCACTGTTT
GGCTTGGTAA CCGCACCACT CTTTAATGGA TTTTCATGGC CCTCAGAAAA TCTTATTGTT
ATTACCGAAG CGGAATTATT TACCACTACA ACAAGACAGC GACGCAAAGG CAAAGCAAAT
GAGAATGCCG ATTCAGACAT GCTGTTTAAG GATCTATCCG AACTGAAAAT CGGCGATCCA
GTGGTACACG CAGAGCATGG CATTGGGCGA TATCAAGGTT TAGTACTTCT CAATTTGGCA
CCACCAAAAG AAGAACCTAG TTTTGAAGAG TTTCTTCATC TTCAATACGC TGGTCAAGCC
ACCTTATACG TCCCCGTTCA GCAGCTGCAA ATGGTTACGC GCTATGCGGG CTCAGACCCT
GATTCCGCCC CACTCCATCA ACTAGGCTCA GGACAATGGG GCAAGGCCAA ACGCAAAGCC
GCACAACAAA TTCGAGATAC GGCTGCTGAG TTATTGGGGC TGTATGCAGC TAGAGCAATT
CGCAAAGGTC ATGCCTTTGA ATTCTCTGCA CATGATTATG CTGCCTTTGC AGAAAGTTTT
GGCTTTGAAG AAACGCCTGA TCAGGCCAAT GCGATTGCCG CCGTGATTGG TGACATGACA
AGCGGTACAC CCATGGATCG CTTAGTGTGT GGTGATGTGG GTTTTGGAAA GACCGAAGTA
GCCTTGCGCG CTAGTTTTGT TGCGGTCATG GGCGGTAAAC AGGTCGCTAT TTTAGCGCCT
ACCACCCTAC TTGCTGAACA ACATGTTGCC ACCTGGAAAG ATCGGTTTGC AGATTGGCCC
GTTCGTATTG TTGAGCTCTC ACGTTTTAAG ACAACCAAAG AGATTAACGT TGCTCTTGCA
GCAATTGCTA AGGGTGAAGC CGACATTATT ATTGGCACAC ATAAGCTACT TTCTAAAGAA
ACTCAATTTG CTAATTTAGG TTTAGTCATT GCTGATGAAG AGCATCGATT TGGAGTGCGT
CAAAAGGATG CTCTGAAGGC CCTGCGGGCT GAGGTAGATA TTCTGACGCT AACAGCCACA
CCAATACCAC GAACCCTGGG TATGGCTATG GAAGGCTTGC GAGAGTTCTC GATTATTGCC
ACAGCACCAC AGAAGCGTTT AGCCATTAAG ACTTTTGTTC GACGCGAGGG TGATGATGTA
ATACGTGAAG CGGTATTACG TGAAATTAAA CGTGGTGGCC AAGTCTATTT CCTGCATAAC
GAAGTTGAAA CAATTCAGAA TCGTAAACAT GCATTACAGG AACTCATCCC CGAAGCCCGG
ATTAGCGTAG CTCACGGACA AATGCACGAA CGTGAACTCG AATCAGTTAT GCGCGAGTTC
GTAACGCAAC GCACCAATAT CTTGTTGTGC ACCACCATCA TTGAAACTGG TATTGACGTT
CCAACGGCCA ATACCATCAT CATGCATCGT GCCGATAAGT TTGGCTTAGC CCAATTACAT
CAATTGCGTG GTCGCGTAGG TCGTTCACAT CACCGGGCAT ATGCCTATTT GTTGGTGCCC
AATTCAGAGG CCTTAAGCAA ACAAGCTCAG TTACGCCTCA ACGCCATTCA AGCAATGGAA
GAATTGGGCT CTGGGTTCTA TTTGGCAATG CATGACCTAG AAATTCGTGG GGCTGGTGAA
GTTTTGGGTG ATAAACAATC GGGTGAAATT CATGAAATTG GCTTTCAGCT TTATACCGAG
ATGCTTAATC GCGCTGTTAA ATCCTTGCGT AGTGGCAAGG AGTCTGATCT GCTTTCACCT
TTGCAGGCAA CTACCGATGT CAATCTTGGT GTTCCCGCCC TGCTGCCAGA AGATTACTGT
CCCGACGTGC ATGAGCGCCT ATCGCTTTAT AAACGCTTTG CCGGCACGCA TGATTTCTCA
GAATTAATGG GCTTGCGTGA AGAGCTGGTG GATCGTTTTG GAGACCTTCC AGATCAAGCC
AGGTCATTTT ATGAAACTCA CCGCCTGCGA CTAGAGATGG CTGGGTTTGG CATTAAAAAG
ATTGATGCAA CGCCTGTTTC CATCCAGATT CAATTTATAC CGAACCCACC AATTGATCCA
ATGAAAATTA TTCAACTCAT TCAATCTTCA AAGCATATTC AACTAAATGG CCAGGATAAA
TTAAAAGTAC TGCCCCAGAA AGATCGAGAA TTTGAGAGGC TAGAGCAACG TCTGGACGCC
ATAAGGCAAG TCTTGCGGCG CCTGAATGAA TCCGCCGTAT TGAGCACAGT AAAAGTAGGC
CAATAA
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| Protein sequence | MSDALNLVPP IPAPRAGRRF TFSGLIGSSD AALIAQTALR YRDKFSVMVI FCAQAQEAQR
LLEEIPAFAP QLKTRLLPDW EILPYDHFSP HQDLVSERLA TLYELLNGSC NIVLVPVTTA
LQRLGPPNFL ASHTFFFRQG DKLNEAALKL QLQQAGYDPV SAVMRPGEYS IRGGLFDLFP
MGSNLPYRLD LFGDEIEQIR AFNPDTQRSL YPVKEVRLLP GHEFPFDDTS RTSFRGRWRE
VFEGDPSRCS IYKDASLGIP SAGIESYLPL FFEENSSLFD YLPRSGDPVW LVSIGDVEET
IKGFWKDTLS RYEFLKHDLD RPILPPKELF LDVDEFFSTS KPYARLSLEN EAVEKNEFFA
VPDISVHRRD ADPISRLRNV VASENVRVLI CSDSAGRKES IRQLFDESNS VASVDGKSLY
SLKPEGFDSI AEFIKSESLF GLVTAPLFNG FSWPSENLIV ITEAELFTTT TRQRRKGKAN
ENADSDMLFK DLSELKIGDP VVHAEHGIGR YQGLVLLNLA PPKEEPSFEE FLHLQYAGQA
TLYVPVQQLQ MVTRYAGSDP DSAPLHQLGS GQWGKAKRKA AQQIRDTAAE LLGLYAARAI
RKGHAFEFSA HDYAAFAESF GFEETPDQAN AIAAVIGDMT SGTPMDRLVC GDVGFGKTEV
ALRASFVAVM GGKQVAILAP TTLLAEQHVA TWKDRFADWP VRIVELSRFK TTKEINVALA
AIAKGEADII IGTHKLLSKE TQFANLGLVI ADEEHRFGVR QKDALKALRA EVDILTLTAT
PIPRTLGMAM EGLREFSIIA TAPQKRLAIK TFVRREGDDV IREAVLREIK RGGQVYFLHN
EVETIQNRKH ALQELIPEAR ISVAHGQMHE RELESVMREF VTQRTNILLC TTIIETGIDV
PTANTIIMHR ADKFGLAQLH QLRGRVGRSH HRAYAYLLVP NSEALSKQAQ LRLNAIQAME
ELGSGFYLAM HDLEIRGAGE VLGDKQSGEI HEIGFQLYTE MLNRAVKSLR SGKESDLLSP
LQATTDVNLG VPALLPEDYC PDVHERLSLY KRFAGTHDFS ELMGLREELV DRFGDLPDQA
RSFYETHRLR LEMAGFGIKK IDATPVSIQI QFIPNPPIDP MKIIQLIQSS KHIQLNGQDK
LKVLPQKDRE FERLEQRLDA IRQVLRRLNE SAVLSTVKVG Q
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