| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0641 |
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| Symbol | |
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| ID | 6183666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 553821 |
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| End bp | 557342 |
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| Gene Length | 3522 bp |
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| Protein Length | 1173 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641671304 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001797500 |
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| Protein GI | 171463387 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0566745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACTC TTCCAGATAA GCAAGTCTAT TCAGAAAAGT TCGCTTGTGA TCCGCAGCGC
TCAGTCATTG TTTCTGCTTG CGCAGGAAGC GGCAAGACTT GGTCATTAGT AGCGCGCATG
GTTCGTCTAT TGCTTGATGA TGTGAAGCCG CAAGAGATCC TCGCACTAAC ATTTACACGC
AAAGCCGCGC AAGAAATGCG TGACCGCTTA TATGGAATGC TAGAGCAATT TTCTAAAATT
GATGATGCCT CATTAATCAA AGAACTTATC GCTAGAGGCA TGGAAAAGGC GCAAGCTGAA
AAATACCTTC CTAAAGCCAA AGCACTTTAT GAGCAGGTAC TGGCAAATCC ACAGCCGATT
GTGATCGATA CCTTTCATGG CTGGTTTGGC AGACTGCTAG GTGCGGCTCC GGTATCGCTT
GGCATCCAGC CGGGGTTCAA ATTGCGCGAA GATGCTAAGC GACTCCAAGC AGAGTGTCTT
GATGATTGGT GGGGCGATCT CACACCAGAG CTCAAAGTGC ATTACGACAT CTTACTTAAA
TATTTGGGCT CTCATGAGAC GCAAAAACTC TTAATGGGTA AAAGTAGTCT CTTTAAGCAA
AGAGGCGCAT GGACTTTCTT TGCTAAGAAA TGCGATCAAG CTGGCATTAC TCCAATAGAG
CAATTAAAAC AATCTCTGCA TAAGTTAAAT CTACCTAATC CGCTGTTAGC TGCGTGGAAT
GCACCTAATG CGCTAGAGGA CCTACAGTTC TTAGCCCGCT GTTTTCAAAA TAGTAGCGCA
AAAGATAGCG ATCTTTTGCA ATACTTGTTG CCGGCCATTG CCTGCAAAGA ATGTGCAGGC
AATGTGATGG AAGTCGCAAG TCACTTTCAA ACCACTTTCT TAACCAAAGA TCCAAAATAT
CGTAGTAATA ACGATAAAGC TTTGGGTGAG GCGAAGAAAT ATCTCGAGAA GATGGGTGAG
TCTCATCGCA TCGATGAGTA CATCGCCATT AAGCAACATT GGGGCCATAC TTTTGAGGAA
TATCTCGAAT GGCAAGCAGA GCAAAATGTC TTTGCCATCA ATGAGGCTTG GTTTGCTCTG
AGTCAATCCA TGATGGCGCA CGCTAATTCT CAAAAAGAGA ATATGCGAGT GCGTGACTTT
GATGATTTGG AAGTTGGCGT TAGCTTGTTG ATGGGCAAGT CTGAGCACAC AGCCTATCTT
CAATCGCGCC TTGATGCAAA GTACAAACAA ATTTTGGTGG ATGAGTTCCA AGATACCAAC
CCATTGCAAT GGCAAATTCT GCGAGCTTGG TTAGCGGGTT ATAGCGAGGG TGATGAGCGG
CCAAAAGTCT TTATCGTAGG TGATCCTAAG CAGTCAATTT ATCGCTTTCG CCGTGCTGAT
CCTAGGTTAT TTGTGAGCGC AGCACAATTT TTACATCAAC ATCATGACGC CGCTTATATT
GAGCAGGATA AAACCCGTCG CAATGCTCCT GAAATCAATA ATGCAGTGAA TGCGATCTTT
CAGGGCGAGC AAGTGCCGCC CGATTACCCA TACTCAGAGC AGCAAACCCT GTGGGTCGCT
CCAGATGTGG GTAAACCAGC CGATGTGTAT GCTGGGCAAG GCGAGATCTA TTTATTGCCT
TTGATTGCTT ATGCAGAGCA GATGCAAGAG CCAAGAGAGG GTAGTGCTTT TGATGGCGCT
ATTGCTGATT CAAGTGAAAC AGTTGGGGTG ATTCAGCGTC AACGTGAGGG CGAGTTGGTT
GCGCGCCTCA TTAAAGAAAT TATTGCTACG CGTAGGGTGG CAGATAAAGA GGGTGGCAAA
GAAGTATGGC GCGAGGCCAG AGCGAGTGAT TTCTTGTTGC TGGTAAAGCG CCGTAAATAC
TTACCTCAAT ACGAAAGAGC GCTGCGTAAT GTAAAGCTTG CCTATGAGAG TCCACGTTTA
GGTGGATTGC TTAATACTCT AGAGATCGAT GACCTCGTTG CCTTGCTGAC CGTTTTGGTA
ACGCCTCGTC ACGATTTACC GCTGGCTCAA GTTCTGAGAA GTCCGATTTT TGGTTTTGCT
GAAAAACAAA TGCAGCAATT AGCAGTAGCG ATGACATCTG GTCCTTACCG TTCCTGGTGG
GATGCGTTGC AAGACGGTAA AGATGCAACG CTTCAAGCCG CAGCGCGTTA TCTCAAGCAT
TGGCATCATT TGGGTGAGCG CTTGCCGGTT CATGACCTAC TAGATCTTAT TTATCAAGAG
GGTGATGTAC GCCTCAAATA TGCTGCGGTC TGTCAGGATC TCGATCGACC ACAGGTCTTG
GCAAACCTAG ACGCCTTCTT AGAGGTGGCG CTCAATCAGG ATGGGGGTCA ATACCCAAGC
TTGAGTCGTT TTATTCAGGA GATGAATACC AAGCGCCGTG GTGATGATGA TGAAACACCT
GATGAGGGTG ATGTCGATGC GGCAAGTGAC GACAATCTAG CCGAAGTCGA TGAAGAGGGT
GAGATGTCAG AAGAAGATCG CCATAAGCGT GTGCGACTTA TGACAATTCA CGGTGCTAAA
GGCTTGGAGT CGCCTTTTGT CGTTATCCTC GATGCGAACA ATACCGATAC TAATGTCGAT
TACAGCGGCG TCTTAATTGA TTGGGTGCCG CAAGAAGAGA GTCCATCCCA TTTATCTCTG
TTTACCTCTA AAACATTGAC TAGCCCTCGC GCTGAGATCA ATGAAGCTGA GAAAAAAATC
GGCGAAAAAG AAAATTGGAA TCTTTTGTAC GTTGCCATGA CTCGTGCACG CCAAGGCCTA
TGGATTAGTG GGGATGCTCA AAAGCCTACT ACCAATAATC CTAGCGGCTT GGATAAGACC
TCTTGGTATG GCAAGGCAAG CAAAGCGGAG TTGTCTGTGT ATCAGGTAGG TGAGCAAGTA
GTGGCTACGG AGAAGTTTGA GGTCATTAAG CCTGCGCAAG AAAACACAGT CGAGGATTTT
GTCTTGGATT GGGACCCTGC GCAAGAAAGT CATGCACAAA TGCTGTCTGA TATTGAGAGC
GGCGTGACGA TTGAAGTGTT TTCAGGTGAA GATGAGCAAG CAGGTAATCC CGACCCAGAA
ATCCTAGAGG AGGGTACGAA CTTCCATAAG CTTCTCGAGT TCATTACCCC AGACTCCGCC
AATCAAAACA AGCCAGCCAT GCCAAGCGAG CAGGAGCTCA TGAACTGGCT CGGTGTTGAC
CGGGGGGGTG CAAACAAACT TATTGCACAC GTCCAAAAAG TACTCACAAC TCCAGAGTTA
AAACACTATC TGACCTCAGG CGAGTGGGTG CAAGCTTGGA ATGAGTTGGA TATCTCTAGC
GAACAAGGCA AGAGCTATCG CATGGACCGC TTGGTAGAGT TTGATAATCA CTTGGCCATC
ATCGATTACA AGCTCACTAT CCCAGAGGTA GGTAGCGAGA AGTATGAAAA GTATCGCAAG
CAGTTACAGG GCTATCAGGC TGAACTCACG CGCATCAGAA AAGACAGGCT CAACAAGGCT
TACTTGATTT CATCTAGGGG TGAGATAGTC GAAGTGAAGT AG
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| Protein sequence | MSTLPDKQVY SEKFACDPQR SVIVSACAGS GKTWSLVARM VRLLLDDVKP QEILALTFTR
KAAQEMRDRL YGMLEQFSKI DDASLIKELI ARGMEKAQAE KYLPKAKALY EQVLANPQPI
VIDTFHGWFG RLLGAAPVSL GIQPGFKLRE DAKRLQAECL DDWWGDLTPE LKVHYDILLK
YLGSHETQKL LMGKSSLFKQ RGAWTFFAKK CDQAGITPIE QLKQSLHKLN LPNPLLAAWN
APNALEDLQF LARCFQNSSA KDSDLLQYLL PAIACKECAG NVMEVASHFQ TTFLTKDPKY
RSNNDKALGE AKKYLEKMGE SHRIDEYIAI KQHWGHTFEE YLEWQAEQNV FAINEAWFAL
SQSMMAHANS QKENMRVRDF DDLEVGVSLL MGKSEHTAYL QSRLDAKYKQ ILVDEFQDTN
PLQWQILRAW LAGYSEGDER PKVFIVGDPK QSIYRFRRAD PRLFVSAAQF LHQHHDAAYI
EQDKTRRNAP EINNAVNAIF QGEQVPPDYP YSEQQTLWVA PDVGKPADVY AGQGEIYLLP
LIAYAEQMQE PREGSAFDGA IADSSETVGV IQRQREGELV ARLIKEIIAT RRVADKEGGK
EVWREARASD FLLLVKRRKY LPQYERALRN VKLAYESPRL GGLLNTLEID DLVALLTVLV
TPRHDLPLAQ VLRSPIFGFA EKQMQQLAVA MTSGPYRSWW DALQDGKDAT LQAAARYLKH
WHHLGERLPV HDLLDLIYQE GDVRLKYAAV CQDLDRPQVL ANLDAFLEVA LNQDGGQYPS
LSRFIQEMNT KRRGDDDETP DEGDVDAASD DNLAEVDEEG EMSEEDRHKR VRLMTIHGAK
GLESPFVVIL DANNTDTNVD YSGVLIDWVP QEESPSHLSL FTSKTLTSPR AEINEAEKKI
GEKENWNLLY VAMTRARQGL WISGDAQKPT TNNPSGLDKT SWYGKASKAE LSVYQVGEQV
VATEKFEVIK PAQENTVEDF VLDWDPAQES HAQMLSDIES GVTIEVFSGE DEQAGNPDPE
ILEEGTNFHK LLEFITPDSA NQNKPAMPSE QELMNWLGVD RGGANKLIAH VQKVLTTPEL
KHYLTSGEWV QAWNELDISS EQGKSYRMDR LVEFDNHLAI IDYKLTIPEV GSEKYEKYRK
QLQGYQAELT RIRKDRLNKA YLISSRGEIV EVK
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