Gene Pnec_0640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0640 
Symbol 
ID6183705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp550837 
End bp553812 
Gene Length2976 bp 
Protein Length991 aa 
Translation table11 
GC content46% 
IMG OID641671303 
Productinactivated superfamily I helicase-like protein 
Protein accessionYP_001797499 
Protein GI171463386 
COG category[L] Replication, recombination and repair 
COG ID[COG3893] Inactivated superfamily I helicase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCGGC CTTTCCCCAC CATTTCTGAC CAAAAGCAGC CACAAGCTTG GGCAATCACG 
CCCAACAGCC AAGCGCTCGC CCAATTGGCA AGGGGTGTTT GGGATTGTGC AGTGCAAACG
AATCAACGCC CCTTGGTGGT GCTTAGTACT GCTGGACCGC TCATTGGGGT AAGAGCGATC
TTAGAGCAAA ACCGACCGAA AGACCTACTA AGCAGTATTG CCTTCTTGCC TCAGGTAATT
AGTTTCACAG ATTGGCTAGA AGCAGCACCC GGCGCCTGGA AGTTTCCGAA GAAGCAAAGT
GATTTGGAGA GATGGCTGGG TGTTTATGCC ACTTTGCGTA AACATAAAAA TTTACAAGCG
TGGTTTAAGG CAGAGACTGA GTCTGGCGCA TGGGGTTTGG CCCAAGCAAT TGTGAAGGCG
TGTGACACCT TATCAACAGC AGTGAGTTCG CAAGTGCAAA AACAGATTCT TGGGTTCATT
CAGAAAAATC AAGCTGAAAC AAGCAATCTT GGTGAGCTTT GCCTTAGTGA GGCGCAAGCA
TCATTAGATA GTACTGTTGC CAAAGTCTAT TCAGGCATGG CGTGCAAAAT AGTAGATCAA
GAGACTAAAG TCTTACTCGA GTTTTGGCGT TACACTGCAA GCGTGAGTGA CCCCGCATTT
CGTAATCAAT TTGCAATAGC CACTCATCTT GAAGCAATTA AGAGTGCAAA TCCAGCAAGG
CCATTAATAT GGGTGGAGAC TGCTGATCCA ACACCAATAG ACCAAGAGAT TATTGGGGCG
CTTCTTAATG AGTATGCTCA ATACGCACCA GTAATAGAGG TAAAGATGGA TTGGCATGAC
GTGGGCTTAT GGTCTGAGTC TATTGGGGCT GAAGATGGTG ATCAAGCAAG AACTCAAGCG
TTAGAAAATG TAAAGCGCAC TCAAAATAAG GGCTGGCGAC TTATAGCCGC AAAACGTTTT
GAAGAATTGG CATGGGCTGC TGCCAAAACA ATTGAGCAAC ATCTCATTAA TGGCAAAACC
AATTTAGCAT TGGTTGCACA AGATCGTTTG GTGGCGAGAA GGGCGCGCGC GTTACTCTCA
CGCCTAGGTC CAGCACTCAA TATTCGTGAT GAAACTGGCT GGAAGTTATC CACGACTCGT
GCAGCTGCAG CGCTTAATAG TTGGCTGGAA CTCATCAAAG CTCCTAAAGA TGGACCGAGC
GCCAAAACCT TGCTTGAGTT TTTACAGAAT CCTTTTTTAG ATCTTGGCAA GATTTTGAAT
CGAGATGCAG AAGCCTGCAT TGGGCTGATT GCAGGGCTTG AAGATATTTT AGTTGGCAGC
AAAGCAGAGT CTGGCTGGAA AACCTTTCAC ATAGCCATTG AGGGGGCGCA AGTGAATGCG
GCAAAAAATG CTAGCGCGAT GCCAGGTACA GTATTGTTTG AGTTATTGCA GTTTGCTCGA
GAGCGTCATC ATGAGTGGCT GACGCTTCAG GTTGATTGCA ATAAGGCCTA TCAGCTGTTA
CAGGTCAATC TTCAAGCGAC TGGCATGGCT CAAAGTCTTG AAAAAGATTC GGCCGGCAAG
CAATTGCTGG AGGTGCTCAA GACATTTGAT TTGAGTAAGA CGCAATACCA GCAAACCTCT
GTACGTTTAA GCGAGTGGCT TAGTTTGCTT AAAACAGTGA TTGAAGGCGC GAGCTATCAA
GAAGCTGGCA AAGAAGCCAA AGCCACACTG AGCATTTTGC CTTTGAGCTC TACACGTATG
CGTGACTTTG AAGCAGTGGT TGTTGTAGGT TGCGATGAGC AGCAGTTGCC AGCCTATTCA
GAGCCGCCAT TATTTTTCTC AGATGCACTT AATCAGCTAT TAAAGACCTC AACAATAGCA
ATGCAGTTTG TGCAGCAATC TAGAGATCTT TCGCAATTGC TAGTGTCATG CCCCAGCGTG
GATTTGCTCT GGCAAAGCAA AAGCAATAAT GGAGAACCGC TCAGACCATC GGCTTGGATA
CAGCGTTTAC AAAATCAAGT TGAGTGGGAG GCTATTCCTG TTCAATTGAA AAAACGCGCT
TTTGAGGCAA CACCAATGGT AATGACAGTA GCGCATTTTG AAGAAGATCT GCCGATGCCG
TTATCAATGA GTCCCAGTGC CTATAAGGCT TTGCGGGATT GCCCATATCG TTATTACGTA
CGTAGCTTAT TGAGCTTACG CAAAAATAAA GAATTTGATG AAGGCTTTGA TGCTTCACTT
GCAGGACAAA CTTTACACAA GTTGCTTAAA CGTTTTTACC ATGCACTTAA AACCCATGAG
CTCACTAATC CATCTCTTAA GACTGATGAA GATCAAAGAC GCGCCTGGAT GGAGCAAAGC
TTAAATGATT ATTCAGAGCA AGAGTTCGCC GCTTTGATTG AGGGTGATGC GAGGGTCATG
GGTACATTAA GAGATTGGCA AAAACAAATA CCGAGTTTTA TAGATTGGCA GTTGCAGCGT
GAGCAAGCGG GTTGGGAATA TTTTGATGGC GAAGTCAAGG TTGGTTTTAA TCTGCCATTT
CAGGATGCTG ACGGCAATAT CAAAATGATT CGTATTGAAG GATATGCCGA TCGCTATGAT
GTCAATGTAG ATAACAGCAA GATTGCTTCG GTGATTGATT ACAAAAATCA ACGCTTTGAA
AAAGTCAAAG CGCGGGCTGA ACATATCTTG GATGATCCGC AGTTATTAAT CTACGCCAAG
GCTGCCAATG AGGAGCAGGA AAGCAATAAG TTAACAGGGT ATCAGGTCCA GCAGGCAGAG
TGGGTGGCCT TGAAGGCAGA TATCTCCAAG GGTGAGCAAA AGGCTGTACG CAGCCAAGAG
GTAGCCGATA TGCCAGCAAT AATGCGGCAG TTCACCGTGC AAATGACGGA AGATGTCGAG
CAACTCTGGG CTAAAAAGCC AATGCAAGCA TTTGCTCCTG AAGGCATCTG TCAATACTGC
GAAGCAAGGG GTATTTGCAG AAAGGGGATT TGGTGA
 
Protein sequence
MPRPFPTISD QKQPQAWAIT PNSQALAQLA RGVWDCAVQT NQRPLVVLST AGPLIGVRAI 
LEQNRPKDLL SSIAFLPQVI SFTDWLEAAP GAWKFPKKQS DLERWLGVYA TLRKHKNLQA
WFKAETESGA WGLAQAIVKA CDTLSTAVSS QVQKQILGFI QKNQAETSNL GELCLSEAQA
SLDSTVAKVY SGMACKIVDQ ETKVLLEFWR YTASVSDPAF RNQFAIATHL EAIKSANPAR
PLIWVETADP TPIDQEIIGA LLNEYAQYAP VIEVKMDWHD VGLWSESIGA EDGDQARTQA
LENVKRTQNK GWRLIAAKRF EELAWAAAKT IEQHLINGKT NLALVAQDRL VARRARALLS
RLGPALNIRD ETGWKLSTTR AAAALNSWLE LIKAPKDGPS AKTLLEFLQN PFLDLGKILN
RDAEACIGLI AGLEDILVGS KAESGWKTFH IAIEGAQVNA AKNASAMPGT VLFELLQFAR
ERHHEWLTLQ VDCNKAYQLL QVNLQATGMA QSLEKDSAGK QLLEVLKTFD LSKTQYQQTS
VRLSEWLSLL KTVIEGASYQ EAGKEAKATL SILPLSSTRM RDFEAVVVVG CDEQQLPAYS
EPPLFFSDAL NQLLKTSTIA MQFVQQSRDL SQLLVSCPSV DLLWQSKSNN GEPLRPSAWI
QRLQNQVEWE AIPVQLKKRA FEATPMVMTV AHFEEDLPMP LSMSPSAYKA LRDCPYRYYV
RSLLSLRKNK EFDEGFDASL AGQTLHKLLK RFYHALKTHE LTNPSLKTDE DQRRAWMEQS
LNDYSEQEFA ALIEGDARVM GTLRDWQKQI PSFIDWQLQR EQAGWEYFDG EVKVGFNLPF
QDADGNIKMI RIEGYADRYD VNVDNSKIAS VIDYKNQRFE KVKARAEHIL DDPQLLIYAK
AANEEQESNK LTGYQVQQAE WVALKADISK GEQKAVRSQE VADMPAIMRQ FTVQMTEDVE
QLWAKKPMQA FAPEGICQYC EARGICRKGI W