| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0503 |
|---|
| Symbol | |
|---|
| ID | 6184456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 451972 |
|---|
| End bp | 453987 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671185 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_001797381 |
|---|
| Protein GI | 171463268 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.720163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 0.76832 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGTCTA ATAGTCCGAC AAATTTAGCG GAGCGTTACG CATTCTTGCA AGCAGAGCTT
GCGCGCCTAG AGCATGCTTA CTATGTACTC GATAACCCAT TACTACCTGA TATTGAGTAT
GACCGCCTTT ATCGTGAGTT ACTCGATATT GAAGCCGTTC ATCCTGAGTG GGTTACGTCA
GAATCCTTAT CTCAGCGGGT AGGCGGGGCA GCATTAAAAG AGTTTGATTC GGTCACTCAT
GCAGTGCCCA TGCTCTCTTT AAATAATGCC TTTGAAGATG CAGAATTAAT TGCTTTTGAT
CGTCGTTGCC GTGAAGTATT ACATGCTGAA CATATGGCTT ATGCCGGGGA ACTCAAGTTT
GATGGCTTGG CGATTTCACT GCGTTATGAA AATGGCTTAT TAGTAACTGC AGCTACCCGG
GGTGATGGTG CTAGCGGTGA AGATGTTACG GCTAATATCA AAACAATCCG TGCTATTCCA
CTAAAGCTCA CTAGAAAAAA CATTCCACAA GTCTTAGAAG TTCGCGGTGA GGTGTTTATG
TACCTCAAAG ATTTCGAGAA AATGAATCGA CAAGCGGCGG AGTTGGGTGA AAAGGAATTT
GCCAATCCGC GTAATGCCGC AGCTGGCAGT CTTCGTCAAT TAGATTCAAA AATTACGGCA
AAGAGACCAC TTTCATTCTT TGCCTATGGC TTAGGCGCCC TAGAACCTCA GTCTTGGCTA
CCCAAAACCC ATGAAGAATT GCTCAATGCC TACATTGAAT TGGGTCTACC GGTTTGTTCT
GAGCGCAAAG TACTGCATTC TGTGCAGGAG ATCTTGGCTT TTTATAGCGA GATAGATGAC
AAAAGAGATT CACTGCCGTA TGACATCGAT GGTGTTGTAT ACAAAGTCAA CTCATTTGCT
GAGCAAGCCA AGCTAGGTTT TGCCTCGCGC GCGCCTAGAT TTGCGCTTGC CCACAAGTAC
CCAGCGCAAG AAGCGCTTAC AACGGTTTTG GGTATTGATG TGCAAGTAGG GCGCACGGGT
GCGATTACAC CAGTGGCAAG ACTTGCTCCT GTAGAGGTGG GTGGCGTCAC AGTCACTAAT
GCAACCTTAC ACAATGAAGA TGAGATCAAG CGCAAAGATG TGCGTATTGG CGATACCGTT
TCAGTGCGAA GAGCGGGTGA CGTGATTCCT GAGGTTGTTT CAGTGATTAA AGATCGCCGT
CCAGCAGATG CTAAAGAGTT TCAGATGCCA AGTCGTTGCC CTGTTTGTGA CTCACATATT
GAGCGTCTAG CCGATGAGGC TGTAGCTCGT TGTAGTGGGG GCTTATTTTG TGGTGCTCAA
CGCAAACAAG CGTTAATTCA TTTTGCGCAC AGAAGAGCGA TGGATATCGA GGGCCTAGGC
GAGAAGATTG TCGACCAGCT GGTGGACCAA AATCTAGTTA GAACTCCTGC TGATCTTTAT
CGCTTGGGAT TTACTGCACT CGCAAACCTA GAGCGCATGG GAGAGAAGTC AGCTGATAAT
CTCATTAAGG CAATTAACCA GTCCAGAAAC ACCACCTTAG CCCGATTTAT CTTTGCTTTA
GGTATTCGTC ATGTGGGCGA GACAACTGCG AAAGATTTGG CAAACCACTA TCAGTCGATG
CATGCCTTAA TGGATGCAGG CGTGGAGGAT TTACTCACCG TTAAGGATGT TGGCCCTGTA
GTTGCAGACT CTATTACAAG CTTCATGCAA GAGGCGCACA ATCGTGAAGT GATTGAGCAG
CTCTTAGCGT CTGGAATGCG GCTCGCTGTA GAAGAAAAAG TCATTAGTGC GGCCGTTGCT
GGTAAAACTT TTGTCCTCAC AGGCACATTC CCAACGATGA CCAGGGATGA AGCAAAAGAT
CTTCTTGAAA AAGCGGGTGC CAAGGTTGCT GGATCAGTTT CCAAGAAAAC TGACTATGTA
GTTGCCGGTA CGGATGCAGG CAGCAAGCTT ACTAAGGCTG AAGAATTGGG TGTACCAGTC
ATCGATGAAG CGGCAATGCT GGATTTACTT AAGTAA
|
|---|
| Protein sequence | MSSNSPTNLA ERYAFLQAEL ARLEHAYYVL DNPLLPDIEY DRLYRELLDI EAVHPEWVTS
ESLSQRVGGA ALKEFDSVTH AVPMLSLNNA FEDAELIAFD RRCREVLHAE HMAYAGELKF
DGLAISLRYE NGLLVTAATR GDGASGEDVT ANIKTIRAIP LKLTRKNIPQ VLEVRGEVFM
YLKDFEKMNR QAAELGEKEF ANPRNAAAGS LRQLDSKITA KRPLSFFAYG LGALEPQSWL
PKTHEELLNA YIELGLPVCS ERKVLHSVQE ILAFYSEIDD KRDSLPYDID GVVYKVNSFA
EQAKLGFASR APRFALAHKY PAQEALTTVL GIDVQVGRTG AITPVARLAP VEVGGVTVTN
ATLHNEDEIK RKDVRIGDTV SVRRAGDVIP EVVSVIKDRR PADAKEFQMP SRCPVCDSHI
ERLADEAVAR CSGGLFCGAQ RKQALIHFAH RRAMDIEGLG EKIVDQLVDQ NLVRTPADLY
RLGFTALANL ERMGEKSADN LIKAINQSRN TTLARFIFAL GIRHVGETTA KDLANHYQSM
HALMDAGVED LLTVKDVGPV VADSITSFMQ EAHNREVIEQ LLASGMRLAV EEKVISAAVA
GKTFVLTGTF PTMTRDEAKD LLEKAGAKVA GSVSKKTDYV VAGTDAGSKL TKAEELGVPV
IDEAAMLDLL K
|
|---|
| |