| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0487 |
|---|
| Symbol | |
|---|
| ID | 6184549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 431752 |
|---|
| End bp | 433557 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641671170 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_001797367 |
|---|
| Protein GI | 171463254 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.624528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 83 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTAT TTTCTCAACG TCCTTTCTCA AAACGCACAG CCACTTGGTT AGCGCAAAGT
GGCTTACATC CGTTGCTGGC GAGACTCTAT GCTGCACGAG GTTTGCAGTC TCCTGAAGAG
CTCTCGCTTG ACTTAAAGCA GTTGATTTCA CCAATAGAAC TAAAGAACTG TATTAATACA
GCAAGCCTAC TGGCCGATAT TCTTGAGAAG AAAGAACCCA TGCTCATCGT CGCTGACTAC
GACTGTGATG GGGCAACAGC TTGTGCAGTT GGTCTTCGAG GCTTACGAAT GTTGGGCGGG
CCAGATACAC CGATTCAGTT TTTGGTGCCC AATCGCTTCA CCATGGGTTA TGGTCTAACT
CCCGAGATTG TAGAGTTAGC TTCTCAGAAA AATCCTAAAC CAAAATATTT AATTACTGTT
GATAACGGCA TCGCGAGTGA AGCTGGCGTT AATCGCGCCA AAGAGCTTGG CATGGAAGTT
ATTGTAACTG ACCACCATCT CCCTGGAGAT CACTTACCAA AAGCGCTGGC AATTGTGAAC
CCCAATCAAC CAGGATGCAC TTTTCCAAGC AAAGCGCTTG CTGGTGTTGG TGTGATGTTT
TATTTACTGG TTGCGTTGCG CGCCGAACTG CGCAAGCGCG GTAAATTTAC AAATAAAACC
CAACCTAAGG TTGAAAATCT TTTAGATCTT GTTGCCTTAG GGACTGTTGC AGACATTGCG
CAACTAGATC GCAATAACCG CGTACTGGTT TCTAACGGTT TAAAACGCAT CCGCGCAGGG
GTATCGCAAC CAGGTATTGA AGCACTATTT CAGGCTGCTA CTCGCGATCC CCGCAAGGCT
AATACCTTTG ATCTTGGTTT TGCCATAGGC CCCAGACTGA ATGCAGCTGG TCGCCTGGCA
GACATGACTT TAGGAATTCG CCTCCTTCTT ACAGATAACA CCGATGAAGC TATGACTCTG
GCACATGAGC TGGACCACAT CAATCGCGAG CGTCGTGTTA TTGAAACAGG CACGCAAGAA
ACAGCCCTAT CTCACCTTGC TGAAGATCAA CTTTCTGGAA CCATGTCTGA ACGCAATAGC
ATTTGCTTGT GGAATCCGGA ATGGCATCAA GGCGTTGTAG GTATTGTCGC TTCACGTCTA
AAAGAGCGCT TTAATCGTCC AGCAATTGTG TTTGCACCTG CTGATGGCAA CACTGGAGAT
GAGTTGCGTG GCTCGGGTCG TTCGCTCACA GGCTTTCATT TAAGAGATGC TCTAGATTTA
GTTTCGAAAC GCGAACCTGG GCTTATTCTG AAATTTGGTG GCCACGCAAT GGCTGCCGGC
TTAACGATTC GCAAAGGTGA TTTTGAAAAG TTTGACGCCT GCTTTCAGCA GGTCGCCTCC
GAACTACTTA CCGATGAATT GTTAGAGCGT CGTCATCCAC ATGATGGCGG TTTAGAACCC
TTTGAATTTA CCCCTGAAAT TGGGGACCTT TTAGCCGAGG AGATCTGGGG TCAAGGCTTT
CCTCAGCCGA TTTTTTATGG GGATTTTGAG ATTACCCAGC AAAGCCTGAT GAAAGAGAAG
CATCTTCGCT TGATGCTAAG GCCTCTGGGG CTTGGGGCAA GCTCTAAACC ACTGACAGCT
GTTTGGTTTA ATCGCACTCA AAGCCTGCCT GCCAAAGCCA AATTAGCCTA CCGTCTAGTA
ACCGATCGCT ACCAAGGCCA AGCCCGAGTA CAGCTCATGA TTGAAGCTCA TGATGAGGCT
TCGGGCCCCC TGACTGTCCC AAAGAATAAC CCCCTTATAA TTAGAGGATG GAAGCTGAAC
AATTAA
|
|---|
| Protein sequence | MSLFSQRPFS KRTATWLAQS GLHPLLARLY AARGLQSPEE LSLDLKQLIS PIELKNCINT
ASLLADILEK KEPMLIVADY DCDGATACAV GLRGLRMLGG PDTPIQFLVP NRFTMGYGLT
PEIVELASQK NPKPKYLITV DNGIASEAGV NRAKELGMEV IVTDHHLPGD HLPKALAIVN
PNQPGCTFPS KALAGVGVMF YLLVALRAEL RKRGKFTNKT QPKVENLLDL VALGTVADIA
QLDRNNRVLV SNGLKRIRAG VSQPGIEALF QAATRDPRKA NTFDLGFAIG PRLNAAGRLA
DMTLGIRLLL TDNTDEAMTL AHELDHINRE RRVIETGTQE TALSHLAEDQ LSGTMSERNS
ICLWNPEWHQ GVVGIVASRL KERFNRPAIV FAPADGNTGD ELRGSGRSLT GFHLRDALDL
VSKREPGLIL KFGGHAMAAG LTIRKGDFEK FDACFQQVAS ELLTDELLER RHPHDGGLEP
FEFTPEIGDL LAEEIWGQGF PQPIFYGDFE ITQQSLMKEK HLRLMLRPLG LGASSKPLTA
VWFNRTQSLP AKAKLAYRLV TDRYQGQARV QLMIEAHDEA SGPLTVPKNN PLIIRGWKLN
N
|
|---|
| |