Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0465 |
Symbol | |
ID | 6184541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 412500 |
End bp | 413780 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641671149 |
Product | polyhydroxyalkanoate depolymerase, intracellular |
Protein accession | YP_001797346 |
Protein GI | 171463233 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0188945 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 75 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTATATC AGTTACACGA ATTTCAAAAA GCCCTACTTC AACCAGTTAG TTCATGGGCA CGCGCTGCGT CTGAAGCCTT TATTAATGCT TCTAATCCCG CTTCTAAAGT TCCGGGGTCT GACCGTCTAG CAGCTAGCTA TGAGCTCCTT TATCGCCTAG GTAAAAACTA CAAGAAACCA GAATTTGGCA TTCGCTCAGT CATGGCACAT GGCAAAGAAG TAGCCATCCA TGAGAGAACT GCTGTTGCAA AGCCATTTTG TAATTTAGTA CGTTTCAAAC GCTTCTCCGA TGATGTCGAA GTCATTAAGA AACTCAAAGA AGATCCAATC GTATTAATTG TTGCTCCATT ATCTGGACAT CACTCCACAT TGTTGCACGA CACTGTGCGC ACTCTCTTGC AAGATCACAA GGTTTACATT ACCGACTGGA TTGATGCACG CTTAGTTCCC ATTGAGGATG GCGAGTTTGG TCTTGATGAC TACGTGCACT ACGTACAAGA ATTCATCCGT ATTATTGGTG CAAAAGATTT GCACGTGATC TCTGTTTGTC AGCCAACAGT TCCAACTTTA GGCGCAATCT CGTTAATGGC ATCAGCAGAT GAAGCAACTC CAGCTTCGAT GATCATGATG GGCGGTCCAA TTGATGCACG CAAATCACCA ACTGCAGTGA ATAACTTGGC GGACCAAAAA TCTTATGAGT GGTTTGAAAG TCACGTGATT TATAACGTGC CGCCTAACTA CCCAGGTGCC GGTCGCAGGG TGTATCCAGG CTTCTTGCAA CATACTGGCT TTATTGCCAT GAACCCACAA AACCATTTGC AGTCTCACTG GGACTACTTC CAAAACTTGG TACATGGGGA TGAGCAAGAT GCAGAAGCCC ATATTCGCTT CTATGATGAG TACAACGCTG TATTGGACCT AGACTCTAAG TTCTACTTAG ACACCATCAA GACTGTTTTT CAAGACTATG CATTGCCTAA CGGCACATGG AAAGTTGCCG GTGAACTCGT GAAACCACAG GATATTAAAA AGACTGCTCT TCTCACCGTT GAAGGTGAGT TGGATGACAT CTCTGGAAGT GGCCAAACAC GTTCAGCCCA TGCCTTATGC GCAGGCATCC CAAAAGAGAA CAAAGATCAC TATGAAGTTG CCGGTGCAGG TCACTATGGC ATCTTTGCTG GTCGTCGCTG GCGCGAAAAG GTTTATCCAA AGATTAAGAC GTTCATTCGT GAGCATCAGA ATACAAAGAA AACCGCTACT CGGACTACCA AGTCTGCATA A
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Protein sequence | MLYQLHEFQK ALLQPVSSWA RAASEAFINA SNPASKVPGS DRLAASYELL YRLGKNYKKP EFGIRSVMAH GKEVAIHERT AVAKPFCNLV RFKRFSDDVE VIKKLKEDPI VLIVAPLSGH HSTLLHDTVR TLLQDHKVYI TDWIDARLVP IEDGEFGLDD YVHYVQEFIR IIGAKDLHVI SVCQPTVPTL GAISLMASAD EATPASMIMM GGPIDARKSP TAVNNLADQK SYEWFESHVI YNVPPNYPGA GRRVYPGFLQ HTGFIAMNPQ NHLQSHWDYF QNLVHGDEQD AEAHIRFYDE YNAVLDLDSK FYLDTIKTVF QDYALPNGTW KVAGELVKPQ DIKKTALLTV EGELDDISGS GQTRSAHALC AGIPKENKDH YEVAGAGHYG IFAGRRWREK VYPKIKTFIR EHQNTKKTAT RTTKSA
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