Gene Pnec_0465 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0465 
Symbol 
ID6184541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp412500 
End bp413780 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content45% 
IMG OID641671149 
Productpolyhydroxyalkanoate depolymerase, intracellular 
Protein accessionYP_001797346 
Protein GI171463233 
COG category[I] Lipid transport and metabolism 
COG ID[COG4553] Poly-beta-hydroxyalkanoate depolymerase 
TIGRFAM ID[TIGR01849] polyhydroxyalkanoate depolymerase, intracellular 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0188945 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTATATC AGTTACACGA ATTTCAAAAA GCCCTACTTC AACCAGTTAG TTCATGGGCA 
CGCGCTGCGT CTGAAGCCTT TATTAATGCT TCTAATCCCG CTTCTAAAGT TCCGGGGTCT
GACCGTCTAG CAGCTAGCTA TGAGCTCCTT TATCGCCTAG GTAAAAACTA CAAGAAACCA
GAATTTGGCA TTCGCTCAGT CATGGCACAT GGCAAAGAAG TAGCCATCCA TGAGAGAACT
GCTGTTGCAA AGCCATTTTG TAATTTAGTA CGTTTCAAAC GCTTCTCCGA TGATGTCGAA
GTCATTAAGA AACTCAAAGA AGATCCAATC GTATTAATTG TTGCTCCATT ATCTGGACAT
CACTCCACAT TGTTGCACGA CACTGTGCGC ACTCTCTTGC AAGATCACAA GGTTTACATT
ACCGACTGGA TTGATGCACG CTTAGTTCCC ATTGAGGATG GCGAGTTTGG TCTTGATGAC
TACGTGCACT ACGTACAAGA ATTCATCCGT ATTATTGGTG CAAAAGATTT GCACGTGATC
TCTGTTTGTC AGCCAACAGT TCCAACTTTA GGCGCAATCT CGTTAATGGC ATCAGCAGAT
GAAGCAACTC CAGCTTCGAT GATCATGATG GGCGGTCCAA TTGATGCACG CAAATCACCA
ACTGCAGTGA ATAACTTGGC GGACCAAAAA TCTTATGAGT GGTTTGAAAG TCACGTGATT
TATAACGTGC CGCCTAACTA CCCAGGTGCC GGTCGCAGGG TGTATCCAGG CTTCTTGCAA
CATACTGGCT TTATTGCCAT GAACCCACAA AACCATTTGC AGTCTCACTG GGACTACTTC
CAAAACTTGG TACATGGGGA TGAGCAAGAT GCAGAAGCCC ATATTCGCTT CTATGATGAG
TACAACGCTG TATTGGACCT AGACTCTAAG TTCTACTTAG ACACCATCAA GACTGTTTTT
CAAGACTATG CATTGCCTAA CGGCACATGG AAAGTTGCCG GTGAACTCGT GAAACCACAG
GATATTAAAA AGACTGCTCT TCTCACCGTT GAAGGTGAGT TGGATGACAT CTCTGGAAGT
GGCCAAACAC GTTCAGCCCA TGCCTTATGC GCAGGCATCC CAAAAGAGAA CAAAGATCAC
TATGAAGTTG CCGGTGCAGG TCACTATGGC ATCTTTGCTG GTCGTCGCTG GCGCGAAAAG
GTTTATCCAA AGATTAAGAC GTTCATTCGT GAGCATCAGA ATACAAAGAA AACCGCTACT
CGGACTACCA AGTCTGCATA A
 
Protein sequence
MLYQLHEFQK ALLQPVSSWA RAASEAFINA SNPASKVPGS DRLAASYELL YRLGKNYKKP 
EFGIRSVMAH GKEVAIHERT AVAKPFCNLV RFKRFSDDVE VIKKLKEDPI VLIVAPLSGH
HSTLLHDTVR TLLQDHKVYI TDWIDARLVP IEDGEFGLDD YVHYVQEFIR IIGAKDLHVI
SVCQPTVPTL GAISLMASAD EATPASMIMM GGPIDARKSP TAVNNLADQK SYEWFESHVI
YNVPPNYPGA GRRVYPGFLQ HTGFIAMNPQ NHLQSHWDYF QNLVHGDEQD AEAHIRFYDE
YNAVLDLDSK FYLDTIKTVF QDYALPNGTW KVAGELVKPQ DIKKTALLTV EGELDDISGS
GQTRSAHALC AGIPKENKDH YEVAGAGHYG IFAGRRWREK VYPKIKTFIR EHQNTKKTAT
RTTKSA