Gene Pnec_0292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0292 
Symbol 
ID6184366 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp265484 
End bp266614 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content49% 
IMG OID641671000 
Product3,4-dihydroxy-2-butanone 4-phosphate synthase 
Protein accessionYP_001797199 
Protein GI171463086 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones89 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAATA CCCTAGCCTC CACCGAAGAA ATCATTACCG ACCTGCGTGT CGGCAAAATG 
GTGATCCTTG TTGACGAAGA AGATCGTGAA AACGAGGGTG ACTTGGTGCT AGCCGCAGAT 
CACGTCACTG CAGAAGCGGT TAATTTCATG GCCAAGCATG GCCGTGGGCT AATTTGCCTC 
ACCCTTACTC GCGAGCGTTG CCAACAACTC AATCTGCCAT TAATGGTGAG AGATAACGGT 
ACTTCCATGG ACACCAATTT CACAGTATCG ATTGAAGCCG CAACTGGTGT GACCACTGGC 
ATCTCTGCCG CAGATCGTGC GCTCACGATT AAAACGGCTG TTGCACCAAA TGCCAAGCCT 
AGTGATTTAG TGCAACCTGG TCATATCTTT CCATTGATGG CTCAGCCTGG TGGTGTATTG 
ATTCGTTCAG GCCACACAGA AGCAGGCTGC GATTTTGCAG CCATGGCTGG CTGCTCACCT 
ACCTCCGTCA TTTGCGAAAT CATGAAAGAT GACGGCAGCA TGGCGCGTCT CCCTGACTTG 
CTAGAGTTTG CTAAAGAACA TCAACTGAAA ATTGGCAGCA TTGCCGATTT GATTCAATAT 
CGTAGCCAAC ACGAAAGTAT TGTGGTTCGC GAAGGCAGTA GAGAATTTAT TACCCCTTGG 
GGGAAATTCC AGGGAATTAT TTATCGCGAT ACCCCTAGCT CCTGTGTACA CATTGCATTA 
GTGCATGGCA AGCCTTCAGA AGCCCAAGAA ACATTAGTGC GCGTACATGA ACCTGTTACG 
GTTCTAGACT TTTTAGACTC TAATGTCAGC ACCCACTCAT GGCCTTTAGC AAAAGCGTTA 
GAACAGATCG CTGCAGCGCC AGCGGGAGTG GCAGTTCTTC TCAATGCCTC CGGTATTGCT 
GCGCCTAGCG ATAGCGATTG GCTTGACCAA TTCCAAAAAC TCAATCGCAC ACACGATGCC 
AAACAAAAGC CGTTAGCTCG CAAAACCGAT TTCAGAAGTT ACGGTATTGG CGCGCAGATC 
CTGAAAGATA TTGGCGTTGA AAAAATGCGC CTACTAGCTA ACCCAAGCCC AGCACCCAGC 
CTTTCTGGCT ACAAGCTTGA AGTGACCGGC TACACCCCAT TCAAACCTTA A
 
Protein sequence
MPNTLASTEE IITDLRVGKM VILVDEEDRE NEGDLVLAAD HVTAEAVNFM AKHGRGLICL 
TLTRERCQQL NLPLMVRDNG TSMDTNFTVS IEAATGVTTG ISAADRALTI KTAVAPNAKP 
SDLVQPGHIF PLMAQPGGVL IRSGHTEAGC DFAAMAGCSP TSVICEIMKD DGSMARLPDL 
LEFAKEHQLK IGSIADLIQY RSQHESIVVR EGSREFITPW GKFQGIIYRD TPSSCVHIAL 
VHGKPSEAQE TLVRVHEPVT VLDFLDSNVS THSWPLAKAL EQIAAAPAGV AVLLNASGIA 
APSDSDWLDQ FQKLNRTHDA KQKPLARKTD FRSYGIGAQI LKDIGVEKMR LLANPSPAPS 
LSGYKLEVTG YTPFKP