| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0177 |
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| Symbol | |
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| ID | 6184528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 156507 |
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| End bp | 157955 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641670897 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001797096 |
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| Protein GI | 171462983 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 74 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATCA TGACCACTCT TGCACAAGCA CAAGCTATGC TGCCTGGAAG CACTCTAGTA
AATGTTTTAG TTGAGGCTGC GCAGCAATTG ACGCTTTCTC GTGTGGGAAC TGATAGTCGT
CAGATTGACC GCAATGAATT ATTTGTGGCT TTGGTTGGTG AGCGCTTTGA TGCTCATGAT
TTTTTATCGG ATGCGGCAAA AGCGGGTACT GGTGCTGCAC TTATAAGTAG TCAAGATAAA
TGCCCCGCAG ATTTGCCTGC AATTTGTGTT TCAAATACTC GCGTTGGTTT AGGAAATCTG
GCAAAAGCCT GGCGTGCCAA TCATCCCATA CCTTTGGCAT TGGTTACCGG TAGTAATGGC
AAGACCACTG TTAAAGAAAT GATTGCCTCT ATTTTTAAGG CTGCAGTAGG CGAACAACAT
ACCTTGGTAA CAAAAGGTAA TTTGAATAAC GATATTGGCT TGCCGTTAAC ACTATTGAAG
TTACGTTCAA CCGATCGACT TGCAGTCGTT GAGCTCGGCA TGAATCATCC TGGTGAAACG
GCTCAATTAG CTGTAATCGC ACAAGCAAAT ATTGCATTAA TTAATAATGC TCAGCGCGAA
CATCAAGAAT TTATGGCCAC TGTTGCAGCA GTAGCGGAAG AGCACTCTGA CGCCATTCGT
ACTTTGCCAA GTGATGGAGT TGCCATCTTC CCAGCAGACT CGGAGTTTGC AGGTGTTTGG
CGCCAAGCAG CCGCAGGTCG AAAAGTGATT GATTTTGTTC TTTCATCTGC GCAGACCAAG
GCCTCAGCTG CAGTGACTGG ATGCCTCCTG AGCAATGGAC TAGTGCAGAT TAAATCTGAA
CAAGGCACTA TCGAAGTTCA GTTAAATACT TTGGGTAGTC ACAATGTTCG CAATGCCTTA
GCGGCAAGTG CTGTTGGTAT CGCCGCTGGC GTCAGCCTCG AAAAAATTAA GCAGGGTCTC
GAATCCTTCT CGCCAGTCAA TGGAAGGATG CAAGCTAAGG CAATTGATTC AAGCCGAACC
CTCATTGATG ATAGCTATAA CGCCAATCCT GATTCTGTAA GAGTGGCCAT TGACGCTTTA
AAACAATCGG GTAATTTGTC ATGGTTGATT TTGGGTGATA TGGGTGAGGT TGGCAATCAA
GGGCCAGAGT TTCATCGGGA AGTTGGCGCT TACGCCGCTG AACAGGGAGT TGCCAAACTC
TTTGCTTTGG GCGAGCAATG CCAATTCGCC CTTCAAGGAT TTAATGAAGT TAATAAAGGT
GGTGAGACTA CCTCTCATGC AAAACATTTT GCGGATATGG ACAGCTTGAT TGCGCAATTG
AGAGATGCGC TGCGCTCACA GTCCAGCGGT AGTAATCAGC ATTTAAACAT TTTGGTTAAA
GGTTCACGAT TTATGCGCAT GGAGCGTGTA GTGCAAGCCT TGTTAGAGGA GGCTAAAACA
TGCTCTTAA
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| Protein sequence | MSIMTTLAQA QAMLPGSTLV NVLVEAAQQL TLSRVGTDSR QIDRNELFVA LVGERFDAHD
FLSDAAKAGT GAALISSQDK CPADLPAICV SNTRVGLGNL AKAWRANHPI PLALVTGSNG
KTTVKEMIAS IFKAAVGEQH TLVTKGNLNN DIGLPLTLLK LRSTDRLAVV ELGMNHPGET
AQLAVIAQAN IALINNAQRE HQEFMATVAA VAEEHSDAIR TLPSDGVAIF PADSEFAGVW
RQAAAGRKVI DFVLSSAQTK ASAAVTGCLL SNGLVQIKSE QGTIEVQLNT LGSHNVRNAL
AASAVGIAAG VSLEKIKQGL ESFSPVNGRM QAKAIDSSRT LIDDSYNANP DSVRVAIDAL
KQSGNLSWLI LGDMGEVGNQ GPEFHREVGA YAAEQGVAKL FALGEQCQFA LQGFNEVNKG
GETTSHAKHF ADMDSLIAQL RDALRSQSSG SNQHLNILVK GSRFMRMERV VQALLEEAKT
CS
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