| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0141 |
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| Symbol | |
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| ID | 6183044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 122463 |
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| End bp | 123779 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641670867 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001797066 |
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| Protein GI | 171462953 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00386004 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.115434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTCATA GCAATCGAGG TAATGTTCTT CAGGCTCTAG GTTTATACGA AGACGCTTTA
TTAAGTTTTG ACGAAGCAAT TCGATTGCTT CCTACATATG CCGAGGCTTA CAACAACAAA
GCAAATGTTT TACAAGATCA ATATCGTTTT GAGGATGCAT TAATTTGGTA TGACAAGGCT
ATTGCAATAG ATCCAAACTA TGCAAAAGCA TATAGCAATA AAGGAAATGC ATTGGAGTGG
CTTCGTAGGC ACGACGAGGC TATGGCGTAT TTTGATGAGG CCTCTTCTGT GGATCCTGGT
CACGTTGATG CTTATTGGCA AAAAGGATTA AGTCAATTAG CGAGCGGAAA TTTTCAATTA
GGATGGCAAA ATTTTGAGGC TAGATGGTCA AAATCGAATC CAGTTAGATT TCAACATGCT
GGAGTGGCTA GACTAGAAAA CCTCAACAAT CTTCATGGCA AGAGGTTGAT CGTATGGGCC
GAGCGAGGTC TTGGTGATTC AATTCAATTT TGCAGATACA TCAAGCCTTT GTCGCAGACT
GGCGCAAAAA TAACTTTTTT AGTACCTGAA CAGTTGTTAG ACATTTTGAA TCCATTGCGT
GCTTTTTGTG ACCTTAGATC AAGTTTGGCT TATGCCCCAG AAGATTTTGA TTTGCAAACG
CCGTTAATGT CTTTGTCTTT GTTATTTGCG ACTGAGTTGA GTACCATACC GCAGGAAATT
TCATATTTAG AAGTTGAAGA AGGCAAGAAA AAACTATTAC AAAACGTACT TCATGCATCA
ACCAACCTAA AGGTTGGTAT TGTGTGGAGT GGCGGCCATC GTTTGGTATA TACGAATAGA
TATTTGGAGG GTGAGCGTCG AAATATAGCG CTTGACCAGA TTGCAGTGCT CGGTGAGCTT
AAGGGAGTTG ATTTTTATAG CCTGCAAAAG GGTGACCCTG CAGAGTCCGA ATTAGTTGCC
AAGAAGAATG ATGCGTGGCC AGACATTATT AATTGTGCGC ATCTAATTCA TGACTTTACA
GATACTGCTG CTTTGATTGA TTCTATAGAT TTGATTGTTT CTGTGGACAC TTCAACAGCC
CATTTGGCAG GTGCTCTTGG AAAACCCGTA TGGATTTTGA ATCGCTATGA CTCTTGTTGG
CGCTGGCTGC GCGGAAGGGA TGATAGCCCC TGGTATCCTT CAGCCAAAAT CTATCATCAA
AAGAAAGTCG CTGACTGGGC TGAGGTTATC GAGCGCGTTA AGGTTGATTT GGCCAAATTA
GCCAAAGTTA TCAGGCCAAG ACGGGAGTTT AAGCCGGTGC CCCTATTGCA TTTATAG
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| Protein sequence | MAHSNRGNVL QALGLYEDAL LSFDEAIRLL PTYAEAYNNK ANVLQDQYRF EDALIWYDKA
IAIDPNYAKA YSNKGNALEW LRRHDEAMAY FDEASSVDPG HVDAYWQKGL SQLASGNFQL
GWQNFEARWS KSNPVRFQHA GVARLENLNN LHGKRLIVWA ERGLGDSIQF CRYIKPLSQT
GAKITFLVPE QLLDILNPLR AFCDLRSSLA YAPEDFDLQT PLMSLSLLFA TELSTIPQEI
SYLEVEEGKK KLLQNVLHAS TNLKVGIVWS GGHRLVYTNR YLEGERRNIA LDQIAVLGEL
KGVDFYSLQK GDPAESELVA KKNDAWPDII NCAHLIHDFT DTAALIDSID LIVSVDTSTA
HLAGALGKPV WILNRYDSCW RWLRGRDDSP WYPSAKIYHQ KKVADWAEVI ERVKVDLAKL
AKVIRPRREF KPVPLLHL
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