Gene Pnec_0136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0136 
Symbol 
ID6184392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp118726 
End bp120126 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content46% 
IMG OID641670861 
ProductCytochrome b/b6 domain 
Protein accessionYP_001797061 
Protein GI171462948 
COG category[C] Energy production and conversion 
COG ID[COG1290] Cytochrome b subunit of the bc complex 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.153935 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATTCC ACGAAAAAGA AGTCCCAGCA GACGCTCCGG TTGCACAGAA GGTCTTAGCT 
TGGGTTGATT CCCGTTTCCC TCTTACATCC TCGATTAAGG CTCACTTAAC TGAGTATTAC
GCGCCGAAGA ACCTGAATTT TTGGTACTTT TTTGGTTCTT TAGCGATTGT GGTGTTGGCA
TTGCAAATCA TTACCGGCAT TTTCTTGGTA GTGAACTACA AGCCTGATGC TGCTAAAGCA
TTTGAGTCCG TTGAATACAT CATGCGTGAA GTTCCATGGG GCTGGATGAT TCGTTATCTG
CATTCCACTG GCGCATCAAT GTTCTTCGTC GTGGTGTATT TGCACATGTT CCGTGGTTTG
ATCTACGGTT CTTATCGCAA GCCACGTGAA TTGATTTGGA TTTTTGGTTG CGCAATTTTC
TTGTGCTTGA TGGGCGAAGC TTTCTTCGGT TACTTGCTCC CATGGGGTCA AATGTCCTAC
TGGGGCGCAC AGGTGATCGT GAACATGTTC TCCGCTATTC CATTCATCGG CCCAGACCTG
TCTCTCTGGT TGCGTGGTGA CTATGTTGTT GGCGATGCAA CGCTAAACCG CTTCTTTGCA
TTCCACGTTA TTGCGATTCC ATTGGTATTG ATTGGCTTGG TTGCAGCTCA CATCATTGCA
TTGCATGAAG TTGGCTCAAA CAATCCAGAT GGCGTAGAAA TCAAAGAAAA CTTAGATGCA
AACGGTTATC CAGTTGATGG CATTCCCTTC CATCCTTACT ACACCGTTCA TGATGTGTTC
GGTCTGAGCG TGTTCTTAAT GATTTTTGCT TGCATCGTGT TCTTTGCACC AGAGATGGGT
GGTTACTTCC TCGAGGCAAA TAACTTCATC CCTGCAAATC CATTGCAAAC GCCTCCGCAC
ATTGCGCCGG TTTGGTATTT CACGCCGTTC TACTCTATGT TGCGCGCAAC AACTACTAAC
TTCTTGTTGC CCTTGTGGAT CTTTTTGGCA GTCATTCTTG GAATGTTTGC CTTGAAATCA
GACGACAAGA AAGTAAAAGG CGCGTGCGCA GCAATTGCGC TGGTATTGGC TGCTGGCTTC
TACTTGTTTG ATGCTAAGTT CTGGGGTGTT GTGATCATGG GTGGTTCAGT AGTGATCATG
CTCTTCTTGC CTTGGCTTGA TAAGTCACCA GTGAAGTCAA TTCGCTATCG TCCACAGTTC
CATAAATATA TTTATGGCGT GTTCGTGGTG AGCTTCATTA TCTTGGGCTA TTTGGGTATT
GAGCCACCAT CACCTGTATT TGAAAAGATT TCTCAGGTAT GCACTATTTA TTATCTGGGC
TTCTTCTTGG CAATGCCGTT CTGGAGCACG CTTGGTACAT TCAAGCCAGT TCCAACGCGC
GTTACTTTTA AGTCCCATTA A
 
Protein sequence
MAFHEKEVPA DAPVAQKVLA WVDSRFPLTS SIKAHLTEYY APKNLNFWYF FGSLAIVVLA 
LQIITGIFLV VNYKPDAAKA FESVEYIMRE VPWGWMIRYL HSTGASMFFV VVYLHMFRGL
IYGSYRKPRE LIWIFGCAIF LCLMGEAFFG YLLPWGQMSY WGAQVIVNMF SAIPFIGPDL
SLWLRGDYVV GDATLNRFFA FHVIAIPLVL IGLVAAHIIA LHEVGSNNPD GVEIKENLDA
NGYPVDGIPF HPYYTVHDVF GLSVFLMIFA CIVFFAPEMG GYFLEANNFI PANPLQTPPH
IAPVWYFTPF YSMLRATTTN FLLPLWIFLA VILGMFALKS DDKKVKGACA AIALVLAAGF
YLFDAKFWGV VIMGGSVVIM LFLPWLDKSP VKSIRYRPQF HKYIYGVFVV SFIILGYLGI
EPPSPVFEKI SQVCTIYYLG FFLAMPFWST LGTFKPVPTR VTFKSH