| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0083 |
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| Symbol | |
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| ID | 6184183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 76539 |
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| End bp | 77837 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641670825 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001797025 |
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| Protein GI | 171462912 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.000822301 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAAGTA AAGCAATTCC TCTTCCTAAG TTATCCGGAT TTACCGAACG CAATGGCAAT
TGGTATGCCG AAGAAGTTCC GCTCACTGAT TTAGCAAAAG AGTTCGGCAC ACCGCTCTAC
GTCTATAGCA AGAAAGCATT AACTGAAGCG TATCAGGCTT ACGATAAGGC ATGTGTTGAT
GCCAATGGCA AGCGTCGTGC TCGTGTGCAC TATGCGATGA AAGCCAATAG CAATTTAGCG
GTGATTGATT GCTTTAAAAA ACTAAGCTCT GGGTTTGATT TAGTTAGCGG GGGAGAATTG
GCTCGCGCAT TAGCTATTGG CGCAGATCCT AAAAGCCTTG TATTTGCTGG CGTTGGCAAG
TCTGCTGCCG AGATAGCTGC CGCCTTGAAA GCGGGTGTCA AATGCATCAA TGCTGAATCA
ATCGCCGAGC TACACAAGAT TAATCAGGTT GCAACCGAAC TAAAACTGCG CGCCCCAATT
TCTTTACGCG TAAATCCTGA TGTCGATGCG CAAACTCATC CTTACATTTC TACTGGATTA
AAGGGCAACA AATTTGGCAT TGTCTATCAC GAGGTTTTAA AAACCTACCG TGAAGCTTCG
CTGCTCTCCC AAATTGATGT TGTTGGTATT GATTGCCATA TCGGTTCACA AATTACTACT
ATCGCTCCTT ACCTAGATGC ACTCGATAAA GTTTTAGATC TAGTAGCTCA ACTGAAAAAA
GAAGGTATTG CCATTCATCA CTTGGACTTG GGTGGTGGCC TCGGAATTTC ATATAGCGAT
GAAACTCCAC CGGATATCAC CGAATTTACG AACACCTTAT TAAATCGAGT TGCTGAACGT
GGCTTCGGTC ATCTAGATGT TGTTCTTGAA CCAGGTAGAT CTTTAGTTGG CAATGCTGGC
GTACTATTAA CCACCGTGGA ATATCTAAAG CCAGGCGCCG AAAAGAACTT CTGCATTGTC
GATGCCTCCA TGACAGAACT AATGCGCCCA GCCTTGTATG AAGCACATCA CGGCATTGTG
CCAGTAAAAA ACAAGCCGGC AGAAGCCTTA ACTTATGACA TTGTTGGCCC CGTTTGCGAG
TCTGGTGACT GGCTAGGCAG AAATCGTCAC TTAGCGGTTG AAGAGGGCGA TCTGCTTGCC
ATCTTATCCG CTGGTGCCTA TGGTTTTGTG ATGGCCTCTA ACTACAACAC GCGCCCTAAA
CCTGCTGAGA TTATGGTTGA TGGCAAAAAT ATTTACATCA TCCGTGCGCG TGAAAATACC
GCTGACTTAT TTTCCTCTGA GAAAACTTTA CCAAACTAA
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| Protein sequence | MTSKAIPLPK LSGFTERNGN WYAEEVPLTD LAKEFGTPLY VYSKKALTEA YQAYDKACVD
ANGKRRARVH YAMKANSNLA VIDCFKKLSS GFDLVSGGEL ARALAIGADP KSLVFAGVGK
SAAEIAAALK AGVKCINAES IAELHKINQV ATELKLRAPI SLRVNPDVDA QTHPYISTGL
KGNKFGIVYH EVLKTYREAS LLSQIDVVGI DCHIGSQITT IAPYLDALDK VLDLVAQLKK
EGIAIHHLDL GGGLGISYSD ETPPDITEFT NTLLNRVAER GFGHLDVVLE PGRSLVGNAG
VLLTTVEYLK PGAEKNFCIV DASMTELMRP ALYEAHHGIV PVKNKPAEAL TYDIVGPVCE
SGDWLGRNRH LAVEEGDLLA ILSAGAYGFV MASNYNTRPK PAEIMVDGKN IYIIRARENT
ADLFSSEKTL PN
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