Gene Pnec_0065 details

Gene Information

• Locus tag: Pnec_0065
• Symbol: rplF
• ID: 6183318
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. necessarius STIR1
• Kingdom: Bacteria
• Replicon accession: NC_010531
• Strand: +
• Start bp: 65015
• End bp: 65548
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641670807
• Product: 50S ribosomal protein L6
• Protein accession: YP_001797007
• Protein GI: 171462894
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00000654167
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.0000000000000139653
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCCCGCG TAGGTAAATC ACCAATTACA GTTCCTAAGG GAGCTGAAAT CAGCATCAAC 
GGTGCAAACA TTACTGTTAA AGGCCCATTG GGCACATTGA CACATAACTT GCACCCTTCA 
GTTGGTTTGA AGCAAGAAGA CGGCGTATTG ACAGTGGTTT TAAATAACGA CTCACCAGAA 
GCTGGTGCTC AGTCAGGTAC TGCACGTGCT TTGGTTAACA ACATGGTTGT TGGCGTAACT 
ACTGGTTTTG AGCGCAAGCT CAGCTTAGTA GGCGTTGGTT ACCGTGCTGC TGCTCAAGGC 
GAAACATTGA AACTGCAGTT GGGTTTCTCA CACGACATTA TTTATAACTT GCCAAAGGGT 
GTGAAGGCTG AGACCCCATC TCAAACTGAA ATCATTATCA AAGGTTCCAA CAAGCAGCAA 
GTTGGCCAGG TCGCAGCTGA AGTTCGCGCA TACCGTTCGC CAGAGCCATA CAAAGGCAAG 
GGTGTTCGCT ACGTGGATGA GGTTGTGCAT CTGAAAGAAA CTAAGAAGAA GTAA 

 

Protein sequence

MSRVGKSPIT VPKGAEISIN GANITVKGPL GTLTHNLHPS VGLKQEDGVL TVVLNNDSPE 
AGAQSGTARA LVNNMVVGVT TGFERKLSLV GVGYRAAAQG ETLKLQLGFS HDIIYNLPKG 
VKAETPSQTE IIIKGSNKQQ VGQVAAEVRA YRSPEPYKGK GVRYVDEVVH LKETKKK