Gene Pnec_0062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0062 
Symbol 
ID6184163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp63727 
End bp64269 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content43% 
IMG OID641670804 
Productribosomal protein L5 
Protein accessionYP_001797004 
Protein GI171462891 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0094] Ribosomal protein L5 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000145784 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value1.96626e-17 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCACAC GTTTTCAAGA ACACTATCAG TCTAAAGTAG TTGCAGATTT GATCGCCAAA 
TTTGGTTACA AGTCTGTAAT GGAAGTTCCA CGTATCACTA AGGTAACCCT GAACATGGGT
TTAGGTGATG CGGTGAACGA CAAGAAAATT ATCGAAAATG CAGTTGGCGA TTTAACTAAA
GTTGCAGGCC AAAAGCCAGT TGTAACTAAA GCGAAAAAAG CGATTGCAGG ATTCAAAATT
CGTCAAGGCT ACCCAATCGG CGCCATGGTG ACATTGCGTA GTTCACGCAT GTACGAATTT
TTGGATCGTT TCGTTACTGT TGCATTGCCA CGCGTACGCG ACTTCCGCGG TATTTCTGGT
AAAGCATTTG ATGGCCGTGG TAACTACAAC ATCGGCGTTA AAGAACAGAT CATTTTCCCT
GAAATCGAAT ACGATAAAAT TGATGCCCTT CGTGGTCTCA ATATCAGTAT TACGACGACT
GCCAAGACCG ACGAAGAAGC AAAAGCTTTG TTGGCGGCAT TCAAATTCCC TTTCCGCAAT
TAA
 
Protein sequence
MSTRFQEHYQ SKVVADLIAK FGYKSVMEVP RITKVTLNMG LGDAVNDKKI IENAVGDLTK 
VAGQKPVVTK AKKAIAGFKI RQGYPIGAMV TLRSSRMYEF LDRFVTVALP RVRDFRGISG
KAFDGRGNYN IGVKEQIIFP EIEYDKIDAL RGLNISITTT AKTDEEAKAL LAAFKFPFRN