| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0043 |
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| Symbol | |
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| ID | 6184140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 48594 |
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| End bp | 52856 |
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| Gene Length | 4263 bp |
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| Protein Length | 1420 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641670785 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001796985 |
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| Protein GI | 171462872 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000085519 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 6.54449e-18 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCAT TGCTCGATTT ATTTAAGCAA ACGCAGGGTG ATGAGCAGTT TGATGTTATC
AAGATTGGCC TCGCATCTCC TGAGAAAATT CGCTCATGGT CTTTTGGTGA AGTACGCAAA
CCAGAAGCTA TCAACTACCG GACTTTTAAG CCCGAGCGTG ATGGTTTGTT CTGCGCCAAG
ATTTTTGGAC CAACCAAAGA CTACGAGTGC TTATGCGGTA AGTACAAGCG CTTAAAGTTC
CGTGGCATTA TCTGTGAGAA GTGCGGTGTT GAAGTAACTC TCGCTAAGGT ACGTCGTGAG
CGCATGGGCC ACATTGAGTT GGCAGCCCCT GTAGCGCACA TCTGGTTCTT GAAGTCCTTG
CCATCCCGTT TGGGCATGGT TCTCGATATG ACATTGCGTG ATATCGAGCG CGTTCTTTAC
TTTGAGGCAT ATGTAGTTGT TGATCCTGGT ATGACTCCTG AAGGCGCAAT GAAGCGTGGT
CAGATCATGT CTGAAGATGA ATACATTGCA AAGACTGAAG AGTATGGTGA CGGCGTATTT
ACTGCAATCA TGGGCGCAGA AGGTATTCGC GATCTCTTGC GTTCGATTGA TATCGATCGT
GAAGTAGAGA CTATTCGTGC TGATTTGAAA GCCACTGGTA GCGATGCCAA GATCAAGAAA
TACGCTAAGC GCTTAAAGGT GCTCGAGGCG TTCCAGACTT CAGGTATTAA GCCTGACTGG
ATGATTATGG AGGTGTTGCC AGTATTGCCA CCAGAGTTGC GCCCATTGGT GCCATTGGAT
GGCGGTCGCT TTGCTACCTC CGATTTGAAC GACCTCTACC GTCGTGTGAT TAACCGTAAT
AACCGCTTGA AGCGTTTGTT AGAGTTGCGT GCACCAGAGA TTATCGTTCG TAACGAAAAA
CGTATGTTGC AAGAAGCGGT TGACTCATTG CTCGATAACG GTCGTCGCGG TAAGGCTATG
ACTGGCGCTA ACAAGCGTCC TCTCAAGTCC TTGGCTGAGA TGATTAAAGG TAAGAGCGGT
CGTTTCCGTC AAAACTTGTT GGGTAAACGC GTTGACTACT CTGGTCGTTC GGTCATCGTG
GTTGGTCCTA CATTGAAATT ACATCAGTGC GGCTTACCAA AATTGATGGC CTTGGAATTG
TTCAAGCCAT TCATCTTCAA CAAGCTGGAA ACTTTAGGAA TTGCAACCAC CATTAAGGCT
GCGAAGAAAG AAGTTGAAAG CCAGACTCCA ATCGTTTGGG ACATTCTTGA AGAAGTGATT
CGTGAGCATC CAATCATGTT GAACCGTGCG CCTACATTGC ATCGTCTTGG TATTCAGGCT
TTTGAGCCAA TGCTGATTGA AGGTAAAGCA ATCCAATTGC ACCCATTAGT CTGCGCGGCA
TTTAACGCTG ACTTTGACGG TGACCAAATG GCGGTTCACG TTCCTTTGTC GCTCGAGGCG
CAAATGGAAG CGCGTACATT GATGTTGGCT TCGAACAACG TATTGTTCCC AGCTAACGGC
GAACCATCCA TCGTTCCTTC GCAGGACGTG GTGTTGGGTC TGTATTACGC TACACGTGAC
AAGATCAATG GCAAGGGCGA AGGCATGGTT TTCGCCAACA TTACTGAAGT AGTGCGTGCA
TACGAAGCAG GTCAAGTTGA ATTGGCTTCT CGTGTTGCTG TGCGTATTAC TGAGTATGAG
ATCGTGGACA AAAAAGCAGA AGGCGATGCG CGTTTTGCTG GGAAGACCAA GATCTATCAA
ACATCAGTTG GCCGTGCGAT CTTGTCTGAG ATTTTGCCTA AAGGCATGTC TTTCGAGGAA
ATTAACAAGC CTTTGAAGAA AAAAGAAATC TCACGCTTAA TCAACACATC ATTCCGTAAG
TGCGGTTTGC GTGAAACAGT GATTTTTGCT GACCGCCTCT TGCAGTCTGG TTTCCGTTTG
GCTACCAATG CTGGTATCTC TGTTGCGATC GACGATATGC TGATCCCAAC ATCTAAAGAG
CGCATCATCA CTGAAGCTTC TACCAAGGTT AAAGAGTATG ACAAGCAGTT CATGTCAGGT
CTCGTAACCA ATCAAGAACG TTATAACAAC GTGGTTGATA TTTGGGGTGC CGCAGGTGAC
CAAGTTGGCA AGGCGATGAT GGATGAGTTG TCACACGTTG ACGTACTCGA CCGTAACGGC
AAGACTGTTC GTCAAGAATC CTTTAACTCC ATCTACATGA TGGCGGATTC TGGTGCGCGT
GGATCTGCAG CGCAGATTCG TCAGTTGGCT GGTATGCGTG GCTTGATGGC TAAGCCTGAC
GGCTCGATCA TTGAAACCCC AATTACTGCG AACTTCCGTG AAGGCTTGAA CGTGTTGCAG
TACTTCATCT CAACCCACGG TGCTCGTAAA GGTCTAGCTG ATACAGCATT GAAGACAGCG
AACTCTGGTT ATTTGACACG TCGTTTGTGC GACGTAACTC AAGATCTCGT GGTGATCGAA
GAGGATTGTG GTGCGACTAC TGGCGTTACG ATGAAGGCGT TGGTTGAAGG CGGCGAAATT
ATCGAAGCAT TGCGTGACCG TATTTTGGGT CGTGTATGTA TCGGTGACAT CGTTCATCCT
GACACACAAG AAGTCATTGT TCCTAACGAC ACGTTGCTTG ATGAAGATCA TGTTGATCAA
ATCGTTGCAT TGGGTATCGA CGAAGTTAAA GTTCGCACAG TATTGTCTTG CTTAACACGC
TTCGGCTTGT GCGCTAAGTG CTACGGACGT GATCTAGGCC GTGGTGGTTT GGTTAACGTT
GGTGAGGCAG TTGGTGTTAT CGCTGCTCAG TCCATCGGTG AGCCAGGCAC ACAGTTGACT
ATGCGTACCT TCCACATTGG TGGCGCAGCG TCACGTGCTT TAGTTGCAAG CAATATTGAA
GCCAAATCAA ATGGCGCATT GAAGTTCTCT GGCACGATGC GTGTTGTGAA GAACTCGAGG
GGTGAGCAGA TCGTGATTTC ACGTTCTGGT GAAGCCTTGA TCGTTGATGA AAACGGCCGT
GAGCGCGAGC GTCATAAAGT ACCTTATGGT GCAACTCTCT TGTTGAAAGA AGATGCGGCG
GTTAAGGCTG GCGCAAGCTT GGCAACCTGG GATCCATTAA CACGCCCGAT TATTTCTGAG
TATGCTGGTA TCGCTCGCTT CGACAACGTT GAAGAAGGCG TAACCGTTGC TAAGCAGGTT
GACGAAATTA CTGGCCTTTC CACTTTGGTG GTAATTGATG GTAAGCGTCG CTCTGCAGCA
AGCAAAGGCG TTCGCCCAGT GATCAATTTG ATTGATGACA AGGGTAACGA TGTGATGATC
GCTGGTACTG ATCACCCGGT AAACATTGGC CTCCAAGTGG GCGCTTTGAT TACTGTTAAG
GATGGTCAGA AGGTCGAAGT TGGTGAAGTA TTGGCGCGTA TTCCAATCGA ATCACAGAAG
ACACGCGACA TTACCGGTGG TTTGCCACGC GTTGCAGAAT TGTTCGAAGC ACGTTCACCA
AAAGACGCAG CTGTATTGGC GAAAGTAACT GGAACTGTTT CCTTCGGTAA AGAAACTAAA
GGTAAACAAC GTTTGGTCAT TACCGATATG GATGGTGAAG CCAATGAATT CTTGATTCCA
AAAGAGAAGC AAGTACTCGT TCATGACGGT CAGGTTGTGA ACAAAGGCGA GATGATTGTG
GAAGGCCCTG CCGATCCACA TGATATCTTG ACTCTCAAAG GCATCGAAGA GCTGGCAATC
TACATCGTTG ATGAAGTTCA AGACGTATAT CGTCTCCAGG GCGTGAAGAT CAATGACAAG
CACATTGAAG TCATCGTGCG TCAAATGTTG CGTCGTGTAC AGGTAACTGA TCCAGGCGAC
ACATCCTTTA TCACTGGTGA GCAAGTTGAG CGCTCTAAAC TCTATGACGA GAATGATCGC
GTCATAGCTG AAGGCAAGCA CCCAGCTCAG TTTGACAACG TATTACTTGG TATTACTAAG
GCATCCTTGT CGACCGACAG CTTCATTTCA GCGGCCTCTT TCCAAGAAAC CACCCGTGTA
TTAACCGAAG CCGCAATTAT GGGCAAGACC GATACACTCC GTGGTCTCAA GGAAAACGTC
ATTATTGGTC GCCTGATTCC TGCTGGTACT GGCCTGTCTT ATCGCCGTGC CCGCAAGGTC
AGGGAGCAAT TCGAGCGTGA CCGTGCTCAA ATGATTGCCG CCGAAGAGGA GGCGATGGCC
AATATGCCTG TAGAAATCGA GGCTGAAGTC GTTGCTCTTA CTGGGGAGGC TGATCCAAGC
TAA
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| Protein sequence | MKALLDLFKQ TQGDEQFDVI KIGLASPEKI RSWSFGEVRK PEAINYRTFK PERDGLFCAK
IFGPTKDYEC LCGKYKRLKF RGIICEKCGV EVTLAKVRRE RMGHIELAAP VAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAYVVVDPG MTPEGAMKRG QIMSEDEYIA KTEEYGDGVF
TAIMGAEGIR DLLRSIDIDR EVETIRADLK ATGSDAKIKK YAKRLKVLEA FQTSGIKPDW
MIMEVLPVLP PELRPLVPLD GGRFATSDLN DLYRRVINRN NRLKRLLELR APEIIVRNEK
RMLQEAVDSL LDNGRRGKAM TGANKRPLKS LAEMIKGKSG RFRQNLLGKR VDYSGRSVIV
VGPTLKLHQC GLPKLMALEL FKPFIFNKLE TLGIATTIKA AKKEVESQTP IVWDILEEVI
REHPIMLNRA PTLHRLGIQA FEPMLIEGKA IQLHPLVCAA FNADFDGDQM AVHVPLSLEA
QMEARTLMLA SNNVLFPANG EPSIVPSQDV VLGLYYATRD KINGKGEGMV FANITEVVRA
YEAGQVELAS RVAVRITEYE IVDKKAEGDA RFAGKTKIYQ TSVGRAILSE ILPKGMSFEE
INKPLKKKEI SRLINTSFRK CGLRETVIFA DRLLQSGFRL ATNAGISVAI DDMLIPTSKE
RIITEASTKV KEYDKQFMSG LVTNQERYNN VVDIWGAAGD QVGKAMMDEL SHVDVLDRNG
KTVRQESFNS IYMMADSGAR GSAAQIRQLA GMRGLMAKPD GSIIETPITA NFREGLNVLQ
YFISTHGARK GLADTALKTA NSGYLTRRLC DVTQDLVVIE EDCGATTGVT MKALVEGGEI
IEALRDRILG RVCIGDIVHP DTQEVIVPND TLLDEDHVDQ IVALGIDEVK VRTVLSCLTR
FGLCAKCYGR DLGRGGLVNV GEAVGVIAAQ SIGEPGTQLT MRTFHIGGAA SRALVASNIE
AKSNGALKFS GTMRVVKNSR GEQIVISRSG EALIVDENGR ERERHKVPYG ATLLLKEDAA
VKAGASLATW DPLTRPIISE YAGIARFDNV EEGVTVAKQV DEITGLSTLV VIDGKRRSAA
SKGVRPVINL IDDKGNDVMI AGTDHPVNIG LQVGALITVK DGQKVEVGEV LARIPIESQK
TRDITGGLPR VAELFEARSP KDAAVLAKVT GTVSFGKETK GKQRLVITDM DGEANEFLIP
KEKQVLVHDG QVVNKGEMIV EGPADPHDIL TLKGIEELAI YIVDEVQDVY RLQGVKINDK
HIEVIVRQML RRVQVTDPGD TSFITGEQVE RSKLYDENDR VIAEGKHPAQ FDNVLLGITK
ASLSTDSFIS AASFQETTRV LTEAAIMGKT DTLRGLKENV IIGRLIPAGT GLSYRRARKV
REQFERDRAQ MIAAEEEAMA NMPVEIEAEV VALTGEADPS
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