Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0042 |
Symbol | rpoB |
ID | 6184223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 44492 |
End bp | 48592 |
Gene Length | 4101 bp |
Protein Length | 1366 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641670784 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001796984 |
Protein GI | 171462871 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 1.24956e-16 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACTATA GCTTCACCGA ACGCAAGCGA GTCCGCAAAA GCTTTGCTAA GCGAGTAAAT AACCATCAGG TTCCATACTT GATCGCAACG CAGCTGGAAT CCTACGCTAA ATTTTTACAG GCTGATAAGC CAGCAATGTC TCGTCTTACT GAGGGACTTC AAGCTGCCTT TACATCAGCA TTCCCAATTG TGTCTAACAA CGGCTATGCA CGTATGGAAT ACGTGTCTTA CCAGTTATCA CAGCCACCGT TTGACGTTAA AGAATGTCAA CAACGTGGTT ACACATACCA CTCTGCCTTA CGCGCAAAAG TTCGCTTGAT TATTTATGAT CGCGAAGCGC CCACCAAGGT TAAAGAGGTA AAAGAGAGCG AAGTCTACAT GGGTGAAATT CCACTCATGA CAGAAAACGG TTCTTTTGTA ATTAACGGCA CTGAGCGCGT CATCGTTTCT CAGTTGCATC GTTCCCCAGG CGTGTTCTTT GAGCACGATA AGGGCAAGAC ACACAGCTCA GGTAAATTGC TGTTCTCAGC ACGCATCATT CCTTACCGTG GTTCATGGCT CGACTTCGAG TTTGATCCAA AAGATATTCT CTATTTCCGC ATTGACCGTC GTCGTAAGAT GCCTGTCACC ATTTTGCTTA AAGCAATTGG TTTAAACAAC GAACAGATTC TTGCGAACTT CTTTAACTTT GACCATTTCT CATTGACTGC TAACGGTGGC TCAATGGAAT TTGTGCCAGA GCGTTTACGT GGTCAGTTGG CCAGCTTTGA TGTGCTCGAC GAGAATGGCG TTGTAGTCAT TCAAAAAGAC AAGCGTATCA ATACAAAACA CATCCGCGAA CTCGAAGCTG CTAAGACAAA AACGATTGCT GTACCAGATG ACTATTTAAT TGGTCGTGTT GTTGCGCGCA ATATTGTTGA TCCAGACTCT GGTGAAATCT TGGCTTATGC TAATGATGAA ATCACTGAAG AGTTGTTGGC GACATTGCGC GATGCAGGTA TCAAGCAATT GGAAACCATC TACACCAATG ATTTAGATTC TGGTGCGTAT ATTTCTCAGA CATTGCGTAC TGATGAAACA GCAGACCAAA TGGCTGCTCG TATCGCCATC TACCGCATGT TGCGTCCTGG TGAGCCTCCA ATAGAAGATG CTGTTGAAGT CTTGTTCCAG CGCCTGTTCT ACAGCGAAGA TACTTATGAT TTGTCACGCG TTGGCCGTAT GAAGGTCAAC AGCCGTTTGA ACCGCCCAGA AATGGAAGGT CCAATGGTTC TGTCAAGCGA AGATATTCTC GACACCATTA AGTCCCTCGT GGACTTGCGT AACGGCAAAG GTGAAGTAGA CGACATCGAT CACTTAGGTA ATCGTCGTGT ACGTTGCGTT GGTGAGTTGG CTGAAAACCA ATTCCGTGCT GGTTTGTCAC GTGTTGAGCG TGCGGTTAAA GAGCGTCTCG GCCAAGCCGA AACTGAAAAC CTCATGCCGC ATGACTTGAC TAACAGCAAG CCAATCTCTT CTGCTATTCG TGAGTTCTTC GGTTCTTCAC AGTTGTCCCA GTTTATGGAC CAAACCAACC CACTCTCAGA GATTACGCAC AAGCGTCGTA TTTCTGCATT GGGACCTGGT GGTTTGATGC GCGAGCGCGC AGGCTTCGAA GTGCGCGACG TGCATCCAAC CCACTACGGA CGTGTTTGCC CAATCGAAAC TCCAGAAGGA CCAAACATTG GTTTGATCAA CTCACTCGCA CTGTTTGCGC GTTTGAATGA GCATGGTTTC CTTGAGACTC CATACCGCAA GGTTTCCAAT AGCAAGGTAA GCGATGAAGT TGTATACCTC TCTGCGATTG AAGAAGCCAA GTATGTGATT GCTCAGGCGA ATGCAACGAT TGATAAGAGC GGTAAATTGG CTGACGAATT GGTTTCTGCT CGTCAAGCTG GTGAAACCAT GATGGTTAGT CCAGAACGCA TTGATTTCAT TGACGTTGCT CCTAGCCAAA TCGTTTCAGC TGCCGCCTCA CTCGTTCCAT TCCTAGAGCA CGATGATGCG AACCGTGCGT TGATGGGTGC GAACATGCAG CGCCAAGCGG TTCCTTGCTT GCGTCCAGAT AAGCCGTTGG TTGGTACTGG TTTAGAGCGT ATTGTTGCGG TTGACTCCGG CACTGTTGTA TTAGCAGCAC GTGGCGGTAT TGTTGATTAC GTTGATGCAA ATCGTGTTGT GATTCGCGTG AACGATGATG AGACTACAGC TGGTGAAGTT GGTGTGGATA TTTATAACCT CATTAAATAC ACCCGCTCAA ACCAAAACAC CAACATCAAC CAACGTCCAA TCGTTAAGGT TGGCGATCGT GTAGCCCGCG GCGACGTGGT TGCTGACGGC GCATCTACCG ATTTGGGCGA ATTGGCCTTG GGTCAGAACA TGACTGTGGC ATTTATGCCA TGGAATGGTT ACAACTTCGA AGATTCAATC TTGATTTCTG AGAAAGTTGT TGCTGATGAT CGCTACACCT CTATTCATAT TGAAGAGTTG TCAGTGGTTG CGCGTGATAC CAAGCTTGGT TCAGAAGAAA TTACTCGCGA TATTTCCAAT TTGGCAGAGT CACAACTCTC CCGTTTGGAC GAAAGCGGCA TTGTTTACAT CGGCGCTGAA GTTGAGGCCG GCGATGTGTT GGTTGGTAAG GTGACTCCAA AGGGCGAGAC AACTCTCACT CCTGAAGAGA AGCTCCTCCG TGCGATCTTT GGCGAAAAAG CATCTGACGT TAAAGATACC TCTTTACGCG TTCCATCAGG AATGATCGGT ACTATTATCG ATGTTCAAGT CTTCACTCGT GAAGGTATTG AGCGCGATGC CCGTGCACAG TCCATCATTC AAGAAGAATT ACAACGCTAT CGTTTGGGCT TAAACGATCA GTTGCGTATT GTTGAGGGCG ATGCCTTCAT GCGTTTAGAG AAGTTGTTGA TTGGCAAAGT TGCCAACGGC GGCCCTAAGA AATTAGCTAA AGGCACCAAG ATCGACAAGG AATACCTTGC TGATTTGGAT AAATACCATC GGTTTGATGT TCGTCCAGCA GATGATGAAG TTGCCTCACA AGTTGAAGCA ATTAAATCCT CTATCGAAGC GAAACGTAAA CAGTTTGATG AAGCTTTTGA AGAGAAGCGC ACCAAACTTA CTCAGGGCGA TGATTTGCAG CCTGGCGTAA CGAAGATGGT TAAGGTGTAC TTGGCTGTTA AACGTCGTTT GCAGCCTGGT GACAAGATGG CCGGTCGTCA CGGTAACAAG GGCGTGGTTT CTAAAATTGC CCCTGCGGAA GACATGCCAT TTATGGCTGA CGGACGCCCT GTTGACATCG TCTTGAACCC ATTGGGCGTT CCTTCCCGTA TGAACGTTGG TCAGATCTTG GAAACCCACT TAGGTTGGGC GGCTCAAGGT ATTGGTAAGC GTGTTGACGA GATGGTTCGT CAACAAGCCA AACAAGCTGA GTTACGTGAG TTCCTCAAAC AACTTTACAA CGAAACAGGC CGTATTGAAG ACATTGACAA CTTCACTGAC GAGCAAATCA CAGTATTGGC TGAAAATCTT CGCCAAGGCT TGCCATTTGC AACTCCAGTG TTTGACGGTG CTACAGAAGC AGAAATCGGA CGCATGCTCG AGTTGGCTTA TCCAGAAGAA GTAGCTACTT CTTTGAAGAT GACGCCTTCA CGTCAGCAAA TGATTTTGTG TGACGGTCGT ACTGGTGATC AGTTTGAGCG CCCAGCAACC GTTGGCGTAA TGCACGTCTT GAAACTCCAC CATTTGGTTG ATGACAAGAT GCATGCTCGT TCAACTGGAC CTTACTCTTT AGTAACGCAA CAGCCATTGG GCGGTAAAGC CCAATTCGGT GGTCAGCGCT TTGGTGAGAT GGAAGTCTGG GCCCTCGAAG CATACGGTGC TTCATATGTC TTGCAGGAAA TGCTGACAGT GAAGTCTGAT GACGTCGCAG GCCGTACCAA GGTTTACGAA AACATCGTCA AGGGCGAGCA CACGATTGAT GCTGGCATGC CCGAATCCTT CAACGTGCTG GTAAAAGAAA TCCGTTCGTT GGGTATTGAG ATTGACATGG AGCGCAACTG A
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Protein sequence | MNYSFTERKR VRKSFAKRVN NHQVPYLIAT QLESYAKFLQ ADKPAMSRLT EGLQAAFTSA FPIVSNNGYA RMEYVSYQLS QPPFDVKECQ QRGYTYHSAL RAKVRLIIYD REAPTKVKEV KESEVYMGEI PLMTENGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII PYRGSWLDFE FDPKDILYFR IDRRRKMPVT ILLKAIGLNN EQILANFFNF DHFSLTANGG SMEFVPERLR GQLASFDVLD ENGVVVIQKD KRINTKHIRE LEAAKTKTIA VPDDYLIGRV VARNIVDPDS GEILAYANDE ITEELLATLR DAGIKQLETI YTNDLDSGAY ISQTLRTDET ADQMAARIAI YRMLRPGEPP IEDAVEVLFQ RLFYSEDTYD LSRVGRMKVN SRLNRPEMEG PMVLSSEDIL DTIKSLVDLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK ERLGQAETEN LMPHDLTNSK PISSAIREFF GSSQLSQFMD QTNPLSEITH KRRISALGPG GLMRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LFARLNEHGF LETPYRKVSN SKVSDEVVYL SAIEEAKYVI AQANATIDKS GKLADELVSA RQAGETMMVS PERIDFIDVA PSQIVSAAAS LVPFLEHDDA NRALMGANMQ RQAVPCLRPD KPLVGTGLER IVAVDSGTVV LAARGGIVDY VDANRVVIRV NDDETTAGEV GVDIYNLIKY TRSNQNTNIN QRPIVKVGDR VARGDVVADG ASTDLGELAL GQNMTVAFMP WNGYNFEDSI LISEKVVADD RYTSIHIEEL SVVARDTKLG SEEITRDISN LAESQLSRLD ESGIVYIGAE VEAGDVLVGK VTPKGETTLT PEEKLLRAIF GEKASDVKDT SLRVPSGMIG TIIDVQVFTR EGIERDARAQ SIIQEELQRY RLGLNDQLRI VEGDAFMRLE KLLIGKVANG GPKKLAKGTK IDKEYLADLD KYHRFDVRPA DDEVASQVEA IKSSIEAKRK QFDEAFEEKR TKLTQGDDLQ PGVTKMVKVY LAVKRRLQPG DKMAGRHGNK GVVSKIAPAE DMPFMADGRP VDIVLNPLGV PSRMNVGQIL ETHLGWAAQG IGKRVDEMVR QQAKQAELRE FLKQLYNETG RIEDIDNFTD EQITVLAENL RQGLPFATPV FDGATEAEIG RMLELAYPEE VATSLKMTPS RQQMILCDGR TGDQFERPAT VGVMHVLKLH HLVDDKMHAR STGPYSLVTQ QPLGGKAQFG GQRFGEMEVW ALEAYGASYV LQEMLTVKSD DVAGRTKVYE NIVKGEHTID AGMPESFNVL VKEIRSLGIE IDMERN
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