Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0023 |
Symbol | atpC |
ID | 6184092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 22898 |
End bp | 23314 |
Gene Length | 417 bp |
Protein Length | 138 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641670757 |
Product | F0F1 ATP synthase subunit epsilon |
Protein accession | YP_001796967 |
Protein GI | 171462854 |
COG category | [C] Energy production and conversion |
COG ID | [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) |
TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.187642 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.000120688 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCAACCA TACGCGTCGA TGTAGTAAGT ACTGAGCAGT CTATTTTCAG CGTGGAAGCC AAGTTTGTTG CGCTTCCTGG CGAAAGTGGT GAGCTCGGCA TTTTGCGCGG CCACACCCCT TTGATTACAC GTATTCGTCC AGGTTCGGTT CGTATTGAAA AAGCCGATGA TGATGAAGAG TTTGTTTTTG TAGCAGGTGG CTATTTAGAG ATTCAGTCGG ATCACGTTAC AGTATTGGCA GATACTGCTA TTCGCGGTCA TGATCTTGAT GAAGCGAAAG CTATTGAAGC CAAGAAACGC GCTGAAGAAG CTATGCAAAA CCGTGGCACC GACTTTGATT TGGCTTTAGC CCAATCTGAG TTTGCAATGG CAGCCGCTCA GCTTGCTGCA ATTGCTCGTT TTCGTCGTAA AAAGTAA
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Protein sequence | MSTIRVDVVS TEQSIFSVEA KFVALPGESG ELGILRGHTP LITRIRPGSV RIEKADDDEE FVFVAGGYLE IQSDHVTVLA DTAIRGHDLD EAKAIEAKKR AEEAMQNRGT DFDLALAQSE FAMAAAQLAA IARFRRKK
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