Gene Pnec_0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0022 
Symbol 
ID6184086 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp21476 
End bp22876 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content47% 
IMG OID641670756 
ProductF0F1 ATP synthase subunit beta 
Protein accessionYP_001796966 
Protein GI171462853 
COG category[C] Energy production and conversion 
COG ID[COG0055] F0F1-type ATP synthase, beta subunit 
TIGRFAM ID[TIGR01039] ATP synthase, F1 beta subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0274087 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value0.000479158 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTAACG GAAATATCGT GCAGTGTATC GGTCCAGTGG TGGACATTCA GTTCCCACGC 
GACAAAATGC CAAACATTTA TGATGCATTG ACATTAGTTG ATGGCGGCGA AAAATCATTT
TCTGAAAAAG GTTTGACCTT TGAAGTTCAG CAACAAATCG GCGACGGCGT AGTTCGTGCG
ATTGCCATGG GTGCGAGCGA TGGTTTGCGT CGTGGCATGG AAGTGAAATC TACAGGTAAG
CCAATTTCTG TACCAGTTGG TCCAGCAACA TTAGGCCGCA TCATGGACGT TTTAGGACGC
CCAATCGATG ACGCAGGTCC GATTGCTACT GAAGAGCGTC GCGCTATTCA CCAGCCAGCA
CCTAAGTTTG ATGAGCTCTC CCCCTCTGTT GATTTGCTCG AAACCGGTAT TAAGGTTATC
GACTTGGTTT GCCCATTCGC TAAAGGCGGT AAGGTTGGCT TGTTCGGCGG TGCGGGTGTT
GGTAAGACCG TGAACATGAT GGAATTGATT AACAACATCG CTAAGCAACA CTCAGGCTTG
TCAGTGTTTG CTGGTGTTGG TGAGCGTACT CGTGAAGGTA ATGACTTTTA CCACGAGATG
AAAGAATCAA ACGTTATCGA CAAAGTGGCG ATGGTGTTTG GTCAGATGAA CGAGCCTCCT
GGCAACCGTT TGCGCGTTGC GTTGACTGGT TTAACAATGG CTGAAGCGTT CCGTGACGAA
GGCCGTGACA TTTTGTTCTT CGTTGACAAT ATCTACCGTT ACACATTGGC CGGTACTGAA
GTTTCTGCGT TGCTCGGCCG TATGCCTTCT GCTGTGGGTT ACCAACCTAC ATTGGCTGAA
GAGATGGGTA AATTGCAAGA ACGTATTACC TCTACAAAGA CTGGTTCTGT TACTTCTATT
CAGGCCGTTT ACGTTCCAGC GGATGACTTG ACCGACCCAT CACCAGCTAC AACCTTCTTG
CACTTAGATT CCACAGTTGT GTTGTCACGT GACATCGCTG CATTGGGTAT TTACCCAGCG
GTTGATCCTT TGGATTCAAC CAGCCGTCAG CTCGATCCAC AAGTGGTTGG TCAAGAGCAT
TATGAAGTAG CGCGCGACGT ACAAATGACA TTGCAACGTT ACAAAGAGTT GCGCGATATT
ATTGCGATTT TGGGTATGGA CGAATTGTCA CCAGAAGACA AATTGGCCGT ATCACGCGCT
CGTAAGATTC AACGTTTCTT GTCCCAGCCT TTCCACGTTG CTGAAGTGTT TACTGGTTCA
CCAGGCAAAT ACGTTCCATT GAAAGAAACT ATCCGTGGTT TCAAAATGAT TTGCAGCGGC
GAATTGGATC ACTTGCCTGA GCAAGCGTTC TACATGGTGG GTTCAATTGA TGAAGCCATC
GAGAAAGCCA AGAAGCTTTA A
 
Protein sequence
MSNGNIVQCI GPVVDIQFPR DKMPNIYDAL TLVDGGEKSF SEKGLTFEVQ QQIGDGVVRA 
IAMGASDGLR RGMEVKSTGK PISVPVGPAT LGRIMDVLGR PIDDAGPIAT EERRAIHQPA
PKFDELSPSV DLLETGIKVI DLVCPFAKGG KVGLFGGAGV GKTVNMMELI NNIAKQHSGL
SVFAGVGERT REGNDFYHEM KESNVIDKVA MVFGQMNEPP GNRLRVALTG LTMAEAFRDE
GRDILFFVDN IYRYTLAGTE VSALLGRMPS AVGYQPTLAE EMGKLQERIT STKTGSVTSI
QAVYVPADDL TDPSPATTFL HLDSTVVLSR DIAALGIYPA VDPLDSTSRQ LDPQVVGQEH
YEVARDVQMT LQRYKELRDI IAILGMDELS PEDKLAVSRA RKIQRFLSQP FHVAEVFTGS
PGKYVPLKET IRGFKMICSG ELDHLPEQAF YMVGSIDEAI EKAKKL