Gene Pnec_0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0020 
Symbol 
ID6184034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp18992 
End bp20533 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content48% 
IMG OID641670754 
ProductF0F1 ATP synthase subunit alpha 
Protein accessionYP_001796964 
Protein GI171462851 
COG category[C] Energy production and conversion 
COG ID[COG0056] F0F1-type ATP synthase, alpha subunit 
TIGRFAM ID[TIGR00962] proton translocating ATP synthase, F1 alpha subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00125706 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value0.000505802 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAACTCA ACCCTTCCGA GATCAGCGAG CTGATCAAAA GCCGAATTAG CGAATTGGGC 
GTTGACTCCC AAGTTCGCAA CGAAGGCACT GTTATTTCAG TGACCGACGG TATTTGCCGC
GTACATGGTT TGTCAGGCGT TATGCAAGGC GAAATGTTGG AGTTTCCGAA CAACACAATC
GGTCTCGCTT TGAACCTTGA GCGTGATTCT GTTGGTGCTG TGGTGTTGGG TGAGTACACC
CATATTAAAG AAGGCGACCC TGTTAAATGT ACCGGCCGCA TTTTGGAGGT ACCTGTTGGC
CCAGAGTTGC TCGGCCGCGT AGTGAGCGTA CTTGGTCAGC CAATTGATGG CAAAGGCCCA
ATCAATACTA AGTTAACTGA CTTTATTGAA AAAGTTGCTC CTGGCGTTAT CGCACGTCAA
TCCGTTAGCC AGCCAGTACA AACTGGTTTG AAGGCGATTG ATGCGATGGT TCCTATTGGC
CGTGGTCAGC GTGAGTTGAT CATTGGCGAC CGTCAGACTG GTAAGACAGC AGTAGCAGTT
GATGCCATCA TTAACCAAAA AGGTAAAGGC GTTTATTGCG TTTACGTAGC GATCGGTCAG
AAAGCCTCTA CTATTGCTAA CGTAGTTCGT AAGCTTACAG AAAACGGCGC AATCGATTAC
ACCATTGTTG TTGCAGCAAG TGCATCTGAG TCTGCAGCGA TGCAGTATCT TTCTGCATAT
GCTGGTTGCA CAATGGGTGA ATACTTCCGT GATCGCGGCG AAGACGCTTT GATCGTTTAC
GATGATTTGA CCAAACAAGC GGTTGCTTAT CGTCAAATCT CCTTGTTGCT CCGTCGTCCA
CCAGGCCGCG AAGCTTATCC TGGTGACGTG TTCTACCTCC ATTCACGCTT GCTCGAGCGC
GCTGCTCGTG TAAATGCTGA GTATGTTGAG AAGTTCACTA ACGGTGCAGT AAAAGGCAAA
ACTGGCTCTT TGACCGCATT GCCAATTATT GAAACTCAAG CTGGTGACGT TTCTGCGTTC
GTTCCAACAA ACGTAATTTC GATTACTGAC GGTCAGATCT TCTTGGAAAC TGACTTGTTT
AACGCTGGCG TACGTCCTGC GATTAACGCC GGTATTTCTG TGTCCCGTGT TGGTGGTACT
GCACAAACTA AAGTCATTAA GAAATTGTCT GGTGGTATTC GTACCGACTT AGCGCAATAT
CGTGAATTGG CAGCGTTTGC TCAGTTCGCA TCTGACCTTG ACGAAGCCAC CCGCAAGCAG
CTCGAGCGTG GTCGCCGTGT TACTGAATTG TGTAAGCAAG CTCAATACAA GCCACTCCAA
GTTTGGGAAA TGGCCGCTTC ACTCTATGCT GTTAATAACG GCTTCTTCGA TGACCTCGAA
GTGAAGAACG TATTGGCCTT CGAAAAAGGT TTGCAAGATC ATTTGAAATC TAAATACGCT
GATTTAGTTG CGCGTATCGA AGCAACCAAA GACCTGAGCA AAGATGACGA AGCTGCTTTG
CGCGCTGCCG TTGAGGATTA CAAGCGTTCT GCCTCTTTCT AA
 
Protein sequence
MQLNPSEISE LIKSRISELG VDSQVRNEGT VISVTDGICR VHGLSGVMQG EMLEFPNNTI 
GLALNLERDS VGAVVLGEYT HIKEGDPVKC TGRILEVPVG PELLGRVVSV LGQPIDGKGP
INTKLTDFIE KVAPGVIARQ SVSQPVQTGL KAIDAMVPIG RGQRELIIGD RQTGKTAVAV
DAIINQKGKG VYCVYVAIGQ KASTIANVVR KLTENGAIDY TIVVAASASE SAAMQYLSAY
AGCTMGEYFR DRGEDALIVY DDLTKQAVAY RQISLLLRRP PGREAYPGDV FYLHSRLLER
AARVNAEYVE KFTNGAVKGK TGSLTALPII ETQAGDVSAF VPTNVISITD GQIFLETDLF
NAGVRPAINA GISVSRVGGT AQTKVIKKLS GGIRTDLAQY RELAAFAQFA SDLDEATRKQ
LERGRRVTEL CKQAQYKPLQ VWEMAASLYA VNNGFFDDLE VKNVLAFEKG LQDHLKSKYA
DLVARIEATK DLSKDDEAAL RAAVEDYKRS ASF