Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0020 |
Symbol | |
ID | 6184034 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 18992 |
End bp | 20533 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641670754 |
Product | F0F1 ATP synthase subunit alpha |
Protein accession | YP_001796964 |
Protein GI | 171462851 |
COG category | [C] Energy production and conversion |
COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00125706 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.000505802 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAACTCA ACCCTTCCGA GATCAGCGAG CTGATCAAAA GCCGAATTAG CGAATTGGGC GTTGACTCCC AAGTTCGCAA CGAAGGCACT GTTATTTCAG TGACCGACGG TATTTGCCGC GTACATGGTT TGTCAGGCGT TATGCAAGGC GAAATGTTGG AGTTTCCGAA CAACACAATC GGTCTCGCTT TGAACCTTGA GCGTGATTCT GTTGGTGCTG TGGTGTTGGG TGAGTACACC CATATTAAAG AAGGCGACCC TGTTAAATGT ACCGGCCGCA TTTTGGAGGT ACCTGTTGGC CCAGAGTTGC TCGGCCGCGT AGTGAGCGTA CTTGGTCAGC CAATTGATGG CAAAGGCCCA ATCAATACTA AGTTAACTGA CTTTATTGAA AAAGTTGCTC CTGGCGTTAT CGCACGTCAA TCCGTTAGCC AGCCAGTACA AACTGGTTTG AAGGCGATTG ATGCGATGGT TCCTATTGGC CGTGGTCAGC GTGAGTTGAT CATTGGCGAC CGTCAGACTG GTAAGACAGC AGTAGCAGTT GATGCCATCA TTAACCAAAA AGGTAAAGGC GTTTATTGCG TTTACGTAGC GATCGGTCAG AAAGCCTCTA CTATTGCTAA CGTAGTTCGT AAGCTTACAG AAAACGGCGC AATCGATTAC ACCATTGTTG TTGCAGCAAG TGCATCTGAG TCTGCAGCGA TGCAGTATCT TTCTGCATAT GCTGGTTGCA CAATGGGTGA ATACTTCCGT GATCGCGGCG AAGACGCTTT GATCGTTTAC GATGATTTGA CCAAACAAGC GGTTGCTTAT CGTCAAATCT CCTTGTTGCT CCGTCGTCCA CCAGGCCGCG AAGCTTATCC TGGTGACGTG TTCTACCTCC ATTCACGCTT GCTCGAGCGC GCTGCTCGTG TAAATGCTGA GTATGTTGAG AAGTTCACTA ACGGTGCAGT AAAAGGCAAA ACTGGCTCTT TGACCGCATT GCCAATTATT GAAACTCAAG CTGGTGACGT TTCTGCGTTC GTTCCAACAA ACGTAATTTC GATTACTGAC GGTCAGATCT TCTTGGAAAC TGACTTGTTT AACGCTGGCG TACGTCCTGC GATTAACGCC GGTATTTCTG TGTCCCGTGT TGGTGGTACT GCACAAACTA AAGTCATTAA GAAATTGTCT GGTGGTATTC GTACCGACTT AGCGCAATAT CGTGAATTGG CAGCGTTTGC TCAGTTCGCA TCTGACCTTG ACGAAGCCAC CCGCAAGCAG CTCGAGCGTG GTCGCCGTGT TACTGAATTG TGTAAGCAAG CTCAATACAA GCCACTCCAA GTTTGGGAAA TGGCCGCTTC ACTCTATGCT GTTAATAACG GCTTCTTCGA TGACCTCGAA GTGAAGAACG TATTGGCCTT CGAAAAAGGT TTGCAAGATC ATTTGAAATC TAAATACGCT GATTTAGTTG CGCGTATCGA AGCAACCAAA GACCTGAGCA AAGATGACGA AGCTGCTTTG CGCGCTGCCG TTGAGGATTA CAAGCGTTCT GCCTCTTTCT AA
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Protein sequence | MQLNPSEISE LIKSRISELG VDSQVRNEGT VISVTDGICR VHGLSGVMQG EMLEFPNNTI GLALNLERDS VGAVVLGEYT HIKEGDPVKC TGRILEVPVG PELLGRVVSV LGQPIDGKGP INTKLTDFIE KVAPGVIARQ SVSQPVQTGL KAIDAMVPIG RGQRELIIGD RQTGKTAVAV DAIINQKGKG VYCVYVAIGQ KASTIANVVR KLTENGAIDY TIVVAASASE SAAMQYLSAY AGCTMGEYFR DRGEDALIVY DDLTKQAVAY RQISLLLRRP PGREAYPGDV FYLHSRLLER AARVNAEYVE KFTNGAVKGK TGSLTALPII ETQAGDVSAF VPTNVISITD GQIFLETDLF NAGVRPAINA GISVSRVGGT AQTKVIKKLS GGIRTDLAQY RELAAFAQFA SDLDEATRKQ LERGRRVTEL CKQAQYKPLQ VWEMAASLYA VNNGFFDDLE VKNVLAFEKG LQDHLKSKYA DLVARIEATK DLSKDDEAAL RAAVEDYKRS ASF
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