Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0010 |
Symbol | |
ID | 6184063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 9917 |
End bp | 10846 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641670745 |
Product | inner-membrane translocator |
Protein accession | YP_001796955 |
Protein GI | 171462842 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 0.00370487 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATCCAA AAACAAAGCT ACTTTATGGA ATTTTGGTCC TAATTGGGTT GTTGCTGCCC TTCCAAGATT GTATTTATCT TGTGTTTGCA ATGAAGGTTT TGTGTTTTGC TTTATTTGCC TGCGCATTTA ATTTGCTGCT TGGCTTCACA GGCCTTTTAT CTTTTGGTCA TGCCGCTTTC TTTGGGACCG CCGCTTACAT TACTGCATAC CTTTGTAAAG AGGCTGGCTT TTCCCCTGAG TTGGGTATCG TGCTAGGTGT TGCTGGTTCT GGAGTTTTTG GCTTTCTAAT TGGTTTATTG GCTATTCGTA GGCAAGGCAT CTACTTTGCG ATGGTGACTT TGGCGCTATC ACAAATGGTT TACTTCCTTG CCGTGCAGCT GCCATTTACC GGTGGTGAGG ATGGCATTCA AGGTGTGCCT CGCGGAATGT TGTTTGGTTT TATTGGCCTA AAAGATGACG TAGCGATGTA TTACTTTGTA CTGACTGTTT TCTTGTTTGG TTTTGCGTTG ATCATGCGCG CAGTTCATTC ACCATTTGGT CAAGTGCTTA AGGCCATTCG TGAGAATGAG CCCCGCGCAA TTTCTTTGGG TTATGACGTT GATCGATTTA AATTAATGTC CTTCGTAATT TCTGCAGCAC TTTCTGGTTT GGCTGGATCA ATGAAGTCCT TGGTGTTCCA GTTAGCAACC CTAACGGATG CTCATTGGCA TATGTCTGGC GAGGTTGTAT TGATGACTTT ACTTGGTGGT ATGGGCACCA TTTTTGGACC AGTTGTTGGC GCAGGAATTG TTGTGGGCTT GCAAAACTAT TTGGCCAACA TTGGATCCTG GAGCACGATT GCAACCGGCT TTATTTTTGT AATTTGTGTT TTGGTTTTCC GTCGTGGCGT TGTTGGTGAA ATTGTTGCGC ACTTCAAAAA CAAAAATTAG
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Protein sequence | MNPKTKLLYG ILVLIGLLLP FQDCIYLVFA MKVLCFALFA CAFNLLLGFT GLLSFGHAAF FGTAAYITAY LCKEAGFSPE LGIVLGVAGS GVFGFLIGLL AIRRQGIYFA MVTLALSQMV YFLAVQLPFT GGEDGIQGVP RGMLFGFIGL KDDVAMYYFV LTVFLFGFAL IMRAVHSPFG QVLKAIRENE PRAISLGYDV DRFKLMSFVI SAALSGLAGS MKSLVFQLAT LTDAHWHMSG EVVLMTLLGG MGTIFGPVVG AGIVVGLQNY LANIGSWSTI ATGFIFVICV LVFRRGVVGE IVAHFKNKN
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