Gene Tneu_1142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTneu_1142 
Symbol 
ID6165811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermoproteus neutrophilus V24Sta 
KingdomArchaea 
Replicon accessionNC_010525 
Strand
Start bp1029847 
End bp1030419 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content61% 
IMG OID641668293 
ProductCRISPR-associated Cas4 family protein 
Protein accessionYP_001794518 
Protein GI171185599 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.142818 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000342837 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGCCCT GCATTAACCC AAGCCTAATA CGGCAGTACC TCTACTGCCC CATGGCCGCC 
TACTACACCG CCACAGGCGC CCCGGAGCCC CCCACCCTCA GGATGCAGAA GGGCAGAGAG
CTCCAGCAGG AGGCCGCACA AGCCGCCGCC AAGGCCCTAG GCGCCCAGAA GGCCGAATAC
GCCGTCCACA TAGCCGCCCC GCCCCTCTGC GGCACGGTAG ACGCCGTCCT CTGGATCAAC
GGAAGGCCAA GCCCCCTCGA GGTGAAGGCC GCGGCGAGGC CCCGCCGCAT CCCCATACAC
CACAAGGCAC AAGCCGCCGC CTACACCGCC ATGGTGCAGA AACGATACGG AAAAGCCGTC
ACCACAGCCT ACATATACTA CGCCGAGAGC GGCCACATAG CCCACATCCA CATCACCAAA
GACCTACAAG AGCTGTTGAA CTACGCCGTC TCGAGACTAC AGCAGATACT CCAGGGAAAG
CCGCCGGTCC TAAACCCAAA TCCGGCGAAA TGCCAAAACT GCTGGTACAG AAAATGGTGC
AGCCACCTGC CAACAACAGT GGAAAAAATC TAG
 
Protein sequence
MQPCINPSLI RQYLYCPMAA YYTATGAPEP PTLRMQKGRE LQQEAAQAAA KALGAQKAEY 
AVHIAAPPLC GTVDAVLWIN GRPSPLEVKA AARPRRIPIH HKAQAAAYTA MVQKRYGKAV
TTAYIYYAES GHIAHIHITK DLQELLNYAV SRLQQILQGK PPVLNPNPAK CQNCWYRKWC
SHLPTTVEKI