Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tneu_0068 |
Symbol | |
ID | 6164678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermoproteus neutrophilus V24Sta |
Kingdom | Archaea |
Replicon accession | NC_010525 |
Strand | + |
Start bp | 63169 |
End bp | 64923 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641667233 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_001793472 |
Protein GI | 171184553 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00333872 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.197829 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGTTTG GGGAGCTGGT GAAAACCCTC GCCGCTGTGG AGTCCACCAC CCAGAGGACC ACCATGGTTA AGCTCCTCAC CTCCCTCCTC AAGAGGGCGA GGCCGGACGA GGTGGACAAG ATAGTCTACT TCGTGCTGGG GGATCTCAAG CCCCCGTGGG AGGGGGTGGA GCTGGGCGTG GCTGAGAAGC TCTGTCTCAG GGCTGTTTCT AAGGCGGCGG GTACGCCGCT GTCTGAGCTG GAGGCAGTCT ACAAGCGGAC TGGGGACGTG GGCGAGGCGG CCAGGAGAGC CCTCTCCGCG GCTAAGAGGC CGGGTCTCCT GGCGTTTGGC CAGCAGAAGC CTCTGGAGGT GTCGGAGGTG TACGACACCC TCCTAAAGGT GGCGAAGGCG GCGGGGGAGG GGGCGCAGGA CATGAAGATA TCGCTTCTGG CCTCCCTCTT CGCCAGAGCT ACCCCCGAGG AGGCTAAGTA CATCGCCAGG TTTGTGGTGG GGAAGCTCAG GCTCGGCGTC GCCGATATGA CGTTGCTGGA GGCGCTCTCT GAGGCCTTCG GCGTGGGGAA GGAGGCCCTC GAGAGGGCGT ACCACGTGTG GCCAGATATG GGCAAGCTGG CGCGCCACGT GGCCGAGGGC CGGCCCCTCG AGGAGGTCAA GATCACGCCG GGGGTCCCCG TACTCCCCAT GCTTGCGCAG AGGCTCTCCA GCGCTTCCGA GATCTTGGCG AAGCTCGGCG GCGCGGCTGT CTGCGAATAT AAATACGACG GCGAGAGGGC GCAGATTCAC ATCAGCGGCG GCTCGGTCAA GATCTTCAGC AGGAGGCTGG AGGACATCAC CCACGCCTAT CCAGACGTGG TCAAGGCCGT GAAGGAGTCC GTGGCGGCGG GGGAGGCCAT ACTGGAGGGG GAGATAGTGG CGGTCGACCC AGATACGGGG GATATGTTGC CGTTTCAGGA GCTGATGCAT AGGAAGAGGA AGCACGAGGT GGCGGCGGCT GTGGAGAGCT ACCCAGCGGT TTTAAACCTC TTCGACGTCC TCTACCTAGA CGGCGAGGAT CTCACGGGGG AGCCCCTCAT CTACAGAAGG CTGAGGCTGT CGGAGGTTGT GCATGAGACG GAGAAGGTCT CGATAGCCAG GTGGAGGCTT TTCGACGACC CCGGCGAGGT AGACGTCTTC TTCCACGAGG CGGTCTCCCT AGGGATGGAG GGCTTGGTCT GTAAATCCCC CACGTCTATA TACGAGATGG GGGCCCGGGG GTGGAACTGG ATTAAGTACA AGAGGGACTA CAAAAGCGAG ATGATTGACA CCGTGGATCT GGTGGTGGTA GGCGCCTTCT ACGGCAGAGG CAAACGGGCG GGGCTCTACG GCGCCTTCCT CCTAGCCGCC TACGACCCCC AGACGGACAT GTTCTACACA GTGTGTAAGG TGGGGAGCGG CTTCACCGAC GCGGACCTCA AGAAGATGTA TGAAGTGCTG CAGCCGTACA AGATCCCGCA TAGACACCCG CGGGTGGTCT CGAAGATGAC CCCCGACGTC TGGTTCACCC CCCAGGTGGT GATCGAGGTG ATCGGGGCGG AGATCACCCT CTCGCCGCTT CACACCTGTT GCCTCGGCGC CGTGAGGCCG GGGGTGGGCC TCGCCATTAG GTTCCCCAGG TTCACCGGCC GGTACAGAAC CGACAAATCG CCGGAGCAGG CCACCACGCC GGCAGAGATG GTGGAGCTCT ACAAGAGGCA GAAGAAGGTG GCTCAGCCCG AGTAG
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Protein sequence | MQFGELVKTL AAVESTTQRT TMVKLLTSLL KRARPDEVDK IVYFVLGDLK PPWEGVELGV AEKLCLRAVS KAAGTPLSEL EAVYKRTGDV GEAARRALSA AKRPGLLAFG QQKPLEVSEV YDTLLKVAKA AGEGAQDMKI SLLASLFARA TPEEAKYIAR FVVGKLRLGV ADMTLLEALS EAFGVGKEAL ERAYHVWPDM GKLARHVAEG RPLEEVKITP GVPVLPMLAQ RLSSASEILA KLGGAAVCEY KYDGERAQIH ISGGSVKIFS RRLEDITHAY PDVVKAVKES VAAGEAILEG EIVAVDPDTG DMLPFQELMH RKRKHEVAAA VESYPAVLNL FDVLYLDGED LTGEPLIYRR LRLSEVVHET EKVSIARWRL FDDPGEVDVF FHEAVSLGME GLVCKSPTSI YEMGARGWNW IKYKRDYKSE MIDTVDLVVV GAFYGRGKRA GLYGAFLLAA YDPQTDMFYT VCKVGSGFTD ADLKKMYEVL QPYKIPHRHP RVVSKMTPDV WFTPQVVIEV IGAEITLSPL HTCCLGAVRP GVGLAIRFPR FTGRYRTDKS PEQATTPAEM VELYKRQKKV AQPE
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