Gene Tneu_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTneu_0048 
Symbol 
ID6164561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermoproteus neutrophilus V24Sta 
KingdomArchaea 
Replicon accessionNC_010525 
Strand
Start bp34070 
End bp35134 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content62% 
IMG OID641667213 
Productisopentenyl pyrophosphate isomerase 
Protein accessionYP_001793452 
Protein GI171184533 
COG category[C] Energy production and conversion 
COG ID[COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 
TIGRFAM ID[TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0360256 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGATTG ACAGGCGGAA AAACGACCAC ATTTATCTGG CGAGCTCCGA GATTTCTCAA 
GTGGGCTCCC CCTGGTTCGA CGAGGTAATC CTAATCCACA ACGCCCTGCC CGAGCTAGAT
CTGTCGGAGG TAGACACCAC TGCCAAGTTC CTGGGGGCCG AGGTCAAGGC GCCGTTTGGA
ATCGGCGCTA TGACCGGCGG GACTGAGCTA GCTGGGAAGA TAAACGCGGA GTTGGCCAAA
GCCGCCGAGG CGTTTGGGAT CCCGATATAC GTCGGCTCCC AGAGGATCGC GTTGGTTAAG
CCAGAGGTGC GCTGGACCTT CGAGGTTGTT AAGAAGAACG CCCCAACTGT GCCGAAGGTG
GCGAACTTGG GGGCGCCCCA GCTTGTGGAA CTCGACGAGG TTAAGCTGGC CGAGTGGGTT
TCGCAGGCGG TAGACATGGT CGACGCGCAC GCGGTGGCTA TCCACCTAAA CGCCGCCCAG
GAGGCTGTCC AGCCGGAGGG CGAGCCCCGC TTCAGGGGGG TGCTGGAGAA GATCAAGGTG
GTGAAAAGGG CGGCCGGCAG GCCGCTTATT GTAAAAGAGG TTGGCAACGG CATATCTAGG
GAGGTGGCCG CACGCCTCGC GGGGGTTGCG GACGCCATCG ACGTGGGGGG CTACGGGGGG
ACCTCCTTCA TAGCGATAGA GGGGGCTAGA GCGGCCGGCG CCGGGGCCCA GCTTCGGCGG
AGGATCGCCG AGACGTTTAA GCTGTGGGGG ATACCCACCG CGGCTTCGAT ATGTGAGGCG
AAGTCCGGCT ACGGGGGCTA CATAATCGCC TCGGGGGGCA TCAGAAGCGG GCTCGACGGC
GTGAAGGCGT TGGCGCTAGG CGCCAGCTTC TTCACCATGT CGCAACCTCT TCTAAAGGCG
GCTCTGGAGG GGAGGCTGAA GGAGGAGATA GAGACCGTCG TAGCCGAGGT GAAGACGGCC
ATGTTTCTCA TAGGCGCTAG GACTGTCAAA GATATCGCGT CGGCGCCTCG GGTCTACGGC
CCGCGTCTGA GAAGCTGGCT GGAGCAGAGG GGGCTCACTT GTTAA
 
Protein sequence
MEIDRRKNDH IYLASSEISQ VGSPWFDEVI LIHNALPELD LSEVDTTAKF LGAEVKAPFG 
IGAMTGGTEL AGKINAELAK AAEAFGIPIY VGSQRIALVK PEVRWTFEVV KKNAPTVPKV
ANLGAPQLVE LDEVKLAEWV SQAVDMVDAH AVAIHLNAAQ EAVQPEGEPR FRGVLEKIKV
VKRAAGRPLI VKEVGNGISR EVAARLAGVA DAIDVGGYGG TSFIAIEGAR AAGAGAQLRR
RIAETFKLWG IPTAASICEA KSGYGGYIIA SGGIRSGLDG VKALALGASF FTMSQPLLKA
ALEGRLKEEI ETVVAEVKTA MFLIGARTVK DIASAPRVYG PRLRSWLEQR GLTC