Gene Tneu_0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTneu_0016 
Symbol 
ID6164835 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermoproteus neutrophilus V24Sta 
KingdomArchaea 
Replicon accessionNC_010525 
Strand
Start bp8980 
End bp9588 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content54% 
IMG OID641667181 
ProductV-type ATPase, D subunit 
Protein accessionYP_001793420 
Protein GI171184501 
COG category[C] Energy production and conversion 
COG ID[COG1394] Archaeal/vacuolar-type H+-ATPase subunit D 
TIGRFAM ID[TIGR00309] H(+)-transporting ATP synthase, vacuolar type, subunit D 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.304681 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGCCAAG TGGCGTTTAG ACCACCCCCA TCCAGGCTGG AGCTGATAAG GCTTAGGCGG 
CAGCTGGTGC TTTTCCAGAG AATGAAAAAA ACCCTGGAGG ACGCGCGCAA CTCCACAATA
CAGAGGATCA GAGCCCTCAT ACCCGACCTA GAAAGGCTGA GGCGGGAGAT AGCCGACGGG
TTCGTCGAGG TAGCAACCAA CTTCAAAATC GCGATAGCCA AGACCGGCAT CGACAGGGTA
GAAAACATAG CGGAGCTCAC CCCCAAAACC GTAAAGGTAG AGCTGGTAAA CAGGGGGACG
CACACCGGCC TCGAGGTCAG CAACTACGTG ACCTACCCCA CCTACAGCCT CGCCACGGAG
GCCGCGGAGC TCGACGTAGC CCTCGTGAAG ATGAGAGAGC TCCTCAAGAA GCTTGTGGAG
TTCGCAGAAA AGGAGACGCT CTTCTACACC CTCCTGAGGA GGGTTAGGGA GTACCAGAGG
ATGATAAACA GCATAGACTA CGTGATAATC CCACGCATAA GAGAAAACAT GCAGTACATA
AGGCTGGCGC TTGAGGAAGG CGAAAGAGAG GAGTTCATAA GGAGAAAGAT AATAACATCA
CGTATATAA
 
Protein sequence
MGQVAFRPPP SRLELIRLRR QLVLFQRMKK TLEDARNSTI QRIRALIPDL ERLRREIADG 
FVEVATNFKI AIAKTGIDRV ENIAELTPKT VKVELVNRGT HTGLEVSNYV TYPTYSLATE
AAELDVALVK MRELLKKLVE FAEKETLFYT LLRRVREYQR MINSIDYVII PRIRENMQYI
RLALEEGERE EFIRRKIITS RI