Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4382 |
Symbol | |
ID | 6161100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4901216 |
End bp | 4903453 |
Gene Length | 2238 bp |
Protein Length | 745 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641667159 |
Product | isocitrate dehydrogenase, NADP-dependent |
Protein accession | YP_001793398 |
Protein GI | 171061049 |
COG category | [C] Energy production and conversion |
COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.000594787 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCCGCTG AAAAAGCCAA GATCATCTAC ACCCTGACCG ACGAGGCGCC CTTGCTGGCG ACTTATTCGT TTCTGCCGAT CGTGCGCACT TTCGCTGCGC CTGCGGGCAT CGACGTCGTC GAGTCCGATA TCTCGGTGGC GGCACGCGTG CTGGGTGAAT TCCCCGAGTA CCTGAGCGAC GAGCAGCGGG TGCCGGACAA CCTGAAGGAA CTCGGCCGGC TCACCCTGCT GCCCGATACC AACATCATCA AGCTGCCCAA CATCAGCGCG TCGCAGAACC AGTTGATCAC CTGCATCCGC GAGTTGCAGT CCAAGGGCTA CGCGCTGCCC GACTTCCCCG AGCAGCCCAA GACCGACGAG GAAAAGGCGA TCCGCCTGCG CTACAACAAG TGCATGGGCA GCGCGGTGAA CCCGGTGCTG CGCGAAGGCA ACTCCGACCG CCGCGCGCCG CGCGCCGTCA AGGAATACGC CCGCAAGAAC CCGCACAGCA TGGCCGAGTG GAGCCAGGCG TCGCGTTCGC ACGTCTCGCA CATGCACCAC GGCGACTTCT ATCACGGCGA AAAGTCGATC ACGCTCGACA AGGCGCGTGA CGTCAAGATG GAACTGCTCA CCAAGAGCGG CAAGACCATC CTGCTCAAGC CGAAGGTCTC GCTGCTCGAC CGCGAAGTCA TCGACAGCAT GTTCATGAGC AAGAAGGAAC TGCTGGCCTT CTACGAGAAG GAGATCGAGG ACGCGCACAA GACCGGCGTG ATGTTCTCGC TGCACGTCAA GGCGACCATG ATGAAGGTGT CGCACCCGAT CGTGTTCGGC CACTGCGTCA AGATCTTCTA CAAGGACGCG TTCGCCAAGC ACGCCAAGCT GTTCGACGAG CTGGGCGTGA ACGTCAACAA CGGCATGGCC AACCTGTACG ACAAGATCGC CACCCTGCCG CAGAGCAAGC AGGACGAGAT CAAGCGCGAC CTGCACGCCT GCCACGAGAA CCGCCCCGAG CTGGCGATGG TCGATTCGGC CAAGGGCATC ACCAACTTCC ACTCGCCAAA CGACGTGATC GTCGACGCCT CGATGCCGGC GATGATCCGC AACGGCGGCA AGATGTGGGG TGCCGACGGC CGCCTGAAGG ACGTCAAGGC CGTGATGCCG GAGTCGACCT TCGCCCGCAT CTACCAGGAG ATCATCAACT TCTGCAAGTG GCACGGCGCC TTCGACCCCA AGACCATGGG CACGGTGCCC AACGTCGGCC TGATGGCCCA GCAGGCCGAG GAATACGGCT CGCACGACAA GACCTTCGAG ATCCCCGAAG ACGGCGTGGC CAACATCACC GACCTGAACA CCGGCGAAGT GCTGCTGAGC CAGAACGTCG AAGAGGGCGA CATCTGGCGC ATGTGCCAGG TCAAGGACGC CGCCATCCGC GACTGGGTCA AGCTGGCCGT CAACCGCGCG CGCAACTCCG GCATGCCGGT GGTGTTCTGG CTCGACGCCT ACCGTCCGCA CGAGGCGCAG CTGATCACCA AGGTCAAGAT GTACCTGCAC GAGCACAACA CCTCCGGCCT GGACATCCAG ATCATGAGCC AGGTGCGTGC CATGCGTTAC ACCCTGGAGC GCGTGATCCG CGGCCAGGAC ACCATCAGCG CCACCGGCAA CATCCTGCGC GACTACCTCA CCGACCTGTT CCCGATCATG GAACTGGGTA CCAGCGCCAA GATGCTGTCG ATCGTGCCGC TGATGGCCGG TGGCGGCATG TACGAGACCG GTGCCGGCGG TTCGGCGCCC AAGCACGTGC AGCAGCTGGT CGAGGAAAAC CACCTGCGCT GGGATTCGCT CGGCGAGTTC CTGGCACTGG CGGTCAGCAT GGAAGACCTC GGCATCAAGA CCGGCAGCAA CAAGGCCAAG ATCCTGGCTC GCACGCTCGA CGCCGCCACC GGCAAGCTGC TCGACAACAA CAAGGGCCCG TCGCCCAAGA CCGGCCAGCT CGACAACCGC GGCAGCCAGT TCTACCTGGC GATGTACTGG GCCCAGGGCC TGGCCGAGCA GACCGAGGAC CTGGAGCTGC AGGCCCACTT CACCGGCCTG GCCAAGTCGC TGACGGAAAA CGAGCAGAAG ATCGCCGACG AGCTGAAGGC CGTGCAGGGC CAGCCGGTCG ACATCGGCGG CTACTACTTC GCCGATCCGC AGAAGGTGAC GGCCGTGATG CGTCCGAGCG CGACCTTCAA CGCCGCCCTG GCGGCTGCGC AGCTCTGA
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Protein sequence | MPAEKAKIIY TLTDEAPLLA TYSFLPIVRT FAAPAGIDVV ESDISVAARV LGEFPEYLSD EQRVPDNLKE LGRLTLLPDT NIIKLPNISA SQNQLITCIR ELQSKGYALP DFPEQPKTDE EKAIRLRYNK CMGSAVNPVL REGNSDRRAP RAVKEYARKN PHSMAEWSQA SRSHVSHMHH GDFYHGEKSI TLDKARDVKM ELLTKSGKTI LLKPKVSLLD REVIDSMFMS KKELLAFYEK EIEDAHKTGV MFSLHVKATM MKVSHPIVFG HCVKIFYKDA FAKHAKLFDE LGVNVNNGMA NLYDKIATLP QSKQDEIKRD LHACHENRPE LAMVDSAKGI TNFHSPNDVI VDASMPAMIR NGGKMWGADG RLKDVKAVMP ESTFARIYQE IINFCKWHGA FDPKTMGTVP NVGLMAQQAE EYGSHDKTFE IPEDGVANIT DLNTGEVLLS QNVEEGDIWR MCQVKDAAIR DWVKLAVNRA RNSGMPVVFW LDAYRPHEAQ LITKVKMYLH EHNTSGLDIQ IMSQVRAMRY TLERVIRGQD TISATGNILR DYLTDLFPIM ELGTSAKMLS IVPLMAGGGM YETGAGGSAP KHVQQLVEEN HLRWDSLGEF LALAVSMEDL GIKTGSNKAK ILARTLDAAT GKLLDNNKGP SPKTGQLDNR GSQFYLAMYW AQGLAEQTED LELQAHFTGL AKSLTENEQK IADELKAVQG QPVDIGGYYF ADPQKVTAVM RPSATFNAAL AAAQL
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