Gene Lcho_4376 details

Gene Information

• Locus tag: Lcho_4376
• ID: 6161029
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4893573
• End bp: 4895552
• Gene Length: 1980 bp
• Protein Length: 659 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 641667153
• Product: superfamily I DNA/RNA helicase
• Protein accession: YP_001793392
• Protein GI: 171061043
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1112] Superfamily I DNA and RNA helicases and helicase subunits

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 33
• Fosmid unclonability p-value: 0.568868
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCCTTT CCGACATCCG CTCGGCCCTC CGCGACGAGC TGGAGGCCAC GCCCGAGCAC 
TACGACTTCA AGGTGCTCGC CAGCGAGCGC GACGGCCATC TCTGGCGCGT CACGCTGCAG 
CCCGGCCACG CCTGGGCCGA GGGCCGGTAC GCCGCGCAGC TGATGCTCGA CGACTCGTTC 
GACGGCTCAT CGGCCTGGTG GGGCGGCCCG CCCAAGGGCC ACGCCAGCGT GCTGGCGATC 
GCGCCCGAGG ACGACCAGAT CATCCTGAAG GACGCCAGCG CGCCGCCGCC CGGCCCCGAC 
CAGCTGATCC GCCTCTACCC GCCGCGTTTC CTCAACGCCC TGGCCGACTG CTGGCGCGAC 
GACGACTGGG CCGGGCTCGC CTGGGCCAGC CTGCGTGACC TGGCCGCACC GAGCCCGGTC 
GCGACCGAGC GCCTGGACGG CGCCGCCTTC GGCTGGCTGC GCCCGGCGCA GCGCCAGGCG 
CTGCAGCTGG TCGGCCAGTC GAGCAGCTTT CTGTGGGGTC CGCCCGGCAC CGGCAAGACC 
ACCGCGCTGG GCGTGCTGCT GGCCGAGTAC CTGCACGTCA ACGCCGGCGC GCGCGTGCTG 
CTGCTGTCGA CCACCAACCA CGCGGTCGAC CAGGCCGTGC TGGCGGTCGA CAAGGCGCTG 
CAGCAGAAGC GCCGCGAGGG TCTGCGCGGC AGCGTCAAGC GGCTCGGCAC GCGCTTCGTG 
GCGAGTGCCT ACCGCGGCCG CGAGCACCTG CTGCCGGTGT TCGATCCGGA TCTGATCGCC 
CGCCTGTCAC GCGCCGAAGC GGCGCGCCCG CCGACCTCCG ATCTGCAGGC CTACAGCCGC 
TGGTCGGAGC GGGTCGAGGG CCTGCGGCTG CAGATGCGCG CCGAGTCGCT ACGGGTGCTG 
CGCAGCGCCC GGCTGGCGGC GATGACGACC ACCCGCGCCG CCTTCACGCT CAAGACGCTG 
CGCGAGCTGC CGCCGTTCGA CCTGGTGGTG TTCGACGAGG CCAGCCAGGT CAGCCTGGCG 
CACACGCTGG CGCTGATCCC GCTCGGCCGG GCGCGGCTGT TCGCGGGCGA TCCGCAGCAG 
CTCGCGCCGG TGGTGCGCAG CGCCAGCCGC GAGGCGCGCC GCTGGCTCGG CCGCTCGCCG 
TTTGCCGAGA AACCGCGTGG CGGGCCGTCG GTCTGCCTGC TCGACGAGCA GTCGCGCATG 
GCCGCGTCGA TCTGCGATCT GGTCAGCCAC CTGTTCTACG ACGGCGAGCT GCGCGTGGCC 
GCCGATGCGC GGGCCGACCC GGCGTGGCTG GCGACGCGTA CGCGGCCGTT CGGCGGCATC 
GAGGCCGATC GGCACGTGCA TGTCGAGACC GTGGCGCAGG ACGGCGGCTG GTCGGCGGCA 
CACCGCGGGC CGGTGCGGGT TGCGTCCGCC GAACACATCG CGCAACGGGT CGCGCAGGCG 
CTGGCGCAAG GCGAGCTGGC CGCGCACGAG CTGGTGCTGC TGACGCCGTT TCGGGCCCAG 
CGCGCGCTGA TCCGCCAGCG GCTGGCGGCG CACGGCGTGT TTCAGGTCAA GGTCAGCACG 
GTGCACCGCG CGCAGGGCAG CGAGGCGGCG GTGGTGATCT TCGACCCGGC CGACGGCGCG 
CAGCCGTTCC TGCGCACCGA GGAGGCCGGG CGGCTCATCA ACGTGGCGCT CAGCCGGGCG 
CAGGCCAAGG TGGTGGTCTA TCTGTCGGGC GCCGACGCGG CCAATCCGGT GCTGGCGCAG 
ATCGTCAACC GGCTGCGGCT GGCCGGCGAT GCGCGGCGCG CCACGCCGAT CGGCGAGCTG 
GCGTTGCGCT CGGATTTCCC GGCTTGCGCG GTGGGCCTGC GGGTGGCGAT CGGGCGCCAT 
GCCGGCGAGG TGTCACGCGC CTCGCCCGAT GGCCGGCAAC TGTGGATGGT CAACGAGGCG 
AGTGGCGCCG AACAGCTGTT CGACGCGGCC TTCCTGCGCC GCAAGGCGGC TGGCGCCTAG 

 

Protein sequence

MSLSDIRSAL RDELEATPEH YDFKVLASER DGHLWRVTLQ PGHAWAEGRY AAQLMLDDSF 
DGSSAWWGGP PKGHASVLAI APEDDQIILK DASAPPPGPD QLIRLYPPRF LNALADCWRD 
DDWAGLAWAS LRDLAAPSPV ATERLDGAAF GWLRPAQRQA LQLVGQSSSF LWGPPGTGKT 
TALGVLLAEY LHVNAGARVL LLSTTNHAVD QAVLAVDKAL QQKRREGLRG SVKRLGTRFV 
ASAYRGREHL LPVFDPDLIA RLSRAEAARP PTSDLQAYSR WSERVEGLRL QMRAESLRVL 
RSARLAAMTT TRAAFTLKTL RELPPFDLVV FDEASQVSLA HTLALIPLGR ARLFAGDPQQ 
LAPVVRSASR EARRWLGRSP FAEKPRGGPS VCLLDEQSRM AASICDLVSH LFYDGELRVA 
ADARADPAWL ATRTRPFGGI EADRHVHVET VAQDGGWSAA HRGPVRVASA EHIAQRVAQA 
LAQGELAAHE LVLLTPFRAQ RALIRQRLAA HGVFQVKVST VHRAQGSEAA VVIFDPADGA 
QPFLRTEEAG RLINVALSRA QAKVVVYLSG ADAANPVLAQ IVNRLRLAGD ARRATPIGEL 
ALRSDFPACA VGLRVAIGRH AGEVSRASPD GRQLWMVNEA SGAEQLFDAA FLRRKAAGA