Gene Lcho_4228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4228 
Symbol 
ID6160688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4739007 
End bp4739672 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content69% 
IMG OID641667005 
ProductDSBA oxidoreductase 
Protein accessionYP_001793244 
Protein GI171060895 
COG category 
COG ID 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.210811 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGTC GAGATTTCTT GGCTCAAACC GCCGCCGTGC TGGGCCTGAC CGGCGTGGCG 
GGTCACGCCG CTGCGCAGTC CTTCCAGGAG GGCAAGCACT ACGTGCGCCT GTCGCAGCAG 
CTGTCCGTGA CGGCGCCCGA AGGCAAGATC GAGGTGGTCG AGTTCTTCTG GTACGGCTGC 
CCGCACTGCC ATGCGTTCGA GCCGACGCTC GACGCCTGGG CCCGCAAGCT GCCGGCCGAC 
GTGGCGTTCC GCCGCGTACA CGTGGGCTTT CGGCCCAACT TCGAGCCGCA GCAGCGCCTG 
TACGCCACGC TCGAGGCGCT CGGCCTGGTC GACAGCCTGC ACCGCAAGGT CTTCCATGCC 
ATCCACCAGC TGCGCCAGCG GCTCGACCGG CCGGAGGACA TCTTCGCTTT CGTCGAGAAG 
AACGGCGCCG ACCGCGCCAA GTTCGTCGAG ATGTACAACT CGTTCGGCAT GCAGGCCAAG 
GTGCGCCAGG GCAAGCAGCT GGCCGAGGCC TACAAGATCG ACGGCGTGCC GGCGCTCGGC 
ATCCACGGCC GCTACTACAC CTCGCCGGCG CTGGCCGGTG GCGACAACAC GCCCGAGCTC 
GAAGGCGGCC TGCGCGCGCT GGCCCTGACC GATCAGCTGG TGGCACGGGT GCGCAAGGGC 
GCCTGA
 
Protein sequence
MDRRDFLAQT AAVLGLTGVA GHAAAQSFQE GKHYVRLSQQ LSVTAPEGKI EVVEFFWYGC 
PHCHAFEPTL DAWARKLPAD VAFRRVHVGF RPNFEPQQRL YATLEALGLV DSLHRKVFHA 
IHQLRQRLDR PEDIFAFVEK NGADRAKFVE MYNSFGMQAK VRQGKQLAEA YKIDGVPALG 
IHGRYYTSPA LAGGDNTPEL EGGLRALALT DQLVARVRKG A