| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4225 |
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| Symbol | |
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| ID | 6160685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4735796 |
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| End bp | 4737406 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641667002 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_001793241 |
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| Protein GI | 171060892 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.390991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACCAT CCCTGCAGGT CCGTCTTTCG CAGCATCTGG CGCTGACGCC CCAGTTGCAG
CAGTCGATCC GGTTGCTGCA ACTGTCGACC CTCGAGCTGC ATCAGGAAGT CGAGCAGATG
CTCGAACAGA ACCCCTTCCT CGAGGCCGAA GAAGACAGCC CCACGCCCGA GAGCCAGGTC
ATCCAGGAGC GCAGCGCCCC GACCCAGGAA GAGTCCCGCT ACGACGCCGA CACCGGTGCC
GCCGATGCGG CCCACGAAGC CGGCGTCGGC GACCCCGAGC CGGTGAGCGT CGAGCAGCTC
GACTTCGGTG CCGGCGAGTC GCGCGAAGAC TGGGACAGCG GCCACGACCG CGAGGACTTC
AACAGCCTGT CGGACACCCC CGCGGCGCGC AACGGCGCCA ACGAGGACGA CGACAGCGAC
TGGAGCGAGC GCTCCACCTT CACGCCCAGC CTGCCCGATC ACCTGCGCGG CCAGCTGCTG
GGCATGCGCC TGGCCGGCGA GGACATGCTG CTGGTCGAGT CGCTGATCGA CTCGCTCAAC
GAGGACGGCT ACCTGGCCGA CACGCTCGAG GAGATCGCCG AACGGCTGGC CTTCGGCATC
GAGGCCGGTG CGGTCGTGAC CGGCGACGCG ATCGACCCGG TCGAGGCCGC GACGATGCGC
GAGGAGCTGA TCGACCGCCT GCGCTGTGCG CTCGGCTGGC TGCAGAGCCT GGAGCCGACC
GGCGTCGGCG CGCGCGACCT GCCCGAGTGC CTGGTGCTGC AGCTGCGCGA GCTCGACCCG
AGCCCGGCGC AGGCCGCCGC CATCCGCATC TGCCAGCACC ACCTCGACCT GCTGGCGCGG
CGCGACATCA AGAAGCTCGT CACCGCCGTG GCCGCCGACG AGGCGCTGAT CCGCGAGGCG
CAGACGCTGA TCGTCGCGCT CGAGCCCAAG CCGGGGCGGC GCTTTGCCCG CGCCGAGGCC
AACATCGTCG TGCCCGACGT GATCGTGCAG AAGGCCGGGC GTGGCTGGCG GGTGGTGCTC
AACCCCGACG TCATGCCCAA GCTGCGCATC AACGACATGT ACGCCCAGGT GCTGCGCCAG
CACCGCAGCC AGCGCGGCGG TGCCACGAAT GGCGGCGGTG ACGGTGGCGC GATGCTGTCG
TCGCGGCTGC AGGAGGCGCG CTGGTTCGTC AAGAACATCC TGCAGCGCTT CGACACCATC
CAGCGTGTCT CGCAGGCCAT CGTCGAGCGC CAGAAGGGCT TCTTCACGCA CGGCGAGATC
GCCATGAAGC CGCTGGTGCT GCGCGAGATC GCCGACGAGC TGGGGCTGCA CGAGTCGACC
ATCTCGCGCG TGACGACGGC CAAGTACATG AACACGCCGT TCGGCACCTT CGAGCTCAAG
TACTTCTTCG GCAGCTCGCT CAACACCGAT GCCGGCGGCA ACGCGTCGAG CACCGCGGTG
CGGGCGCTGA TCAAGCAGTT CGTGGCGGCC GAGGACCCCA AGAAACCGCT GTCGGACAGC
CAGCTGAGCA CCATGCTCGA AGAGCAGGGC ATCCAGGTGG CGCGCCGCAC GGTGGCCAAG
TACCGCGAGG CGCTCAAGAT CGCACCGGCG AACCTGCGCA AGGACATCTG A
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| Protein sequence | MKPSLQVRLS QHLALTPQLQ QSIRLLQLST LELHQEVEQM LEQNPFLEAE EDSPTPESQV
IQERSAPTQE ESRYDADTGA ADAAHEAGVG DPEPVSVEQL DFGAGESRED WDSGHDREDF
NSLSDTPAAR NGANEDDDSD WSERSTFTPS LPDHLRGQLL GMRLAGEDML LVESLIDSLN
EDGYLADTLE EIAERLAFGI EAGAVVTGDA IDPVEAATMR EELIDRLRCA LGWLQSLEPT
GVGARDLPEC LVLQLRELDP SPAQAAAIRI CQHHLDLLAR RDIKKLVTAV AADEALIREA
QTLIVALEPK PGRRFARAEA NIVVPDVIVQ KAGRGWRVVL NPDVMPKLRI NDMYAQVLRQ
HRSQRGGATN GGGDGGAMLS SRLQEARWFV KNILQRFDTI QRVSQAIVER QKGFFTHGEI
AMKPLVLREI ADELGLHEST ISRVTTAKYM NTPFGTFELK YFFGSSLNTD AGGNASSTAV
RALIKQFVAA EDPKKPLSDS QLSTMLEEQG IQVARRTVAK YREALKIAPA NLRKDI
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