Gene Lcho_4220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4220 
Symbol 
ID6163892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4731180 
End bp4731803 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content63% 
IMG OID641666997 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_001793236 
Protein GI171060887 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0174615 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAGC TGCTGCTGAC GATCGACAAG ATCAGCACCT TCATCGGCCA GGCGTTTTCC 
TGGCTGATCG TCGCGCTCAC GCTGATGATC TCGTGGGAGG TCTTCTCGCG TTATGCGCTC
GACAACCCGC ACGCGTGGGC CTTCGACGCC ATGATCATCC TGTACGGCAC GCTGTTCATG
ATGGCCGGCG CCTACACGCT GGCCAAGGCC GGCCACGTGC GCGGCGACGT GCTGTACGGC
TTCTTCGAGC CGCGCACGCA GGCGACGATC GACCTGATCC TCTACATCCT CTTCTTCATG
CCCGGCGTGT TTGCGCTGAC CTATGCCGGC TACCACTTCG CGGCCGAGTC GTGGGCCATC
CTCGAGCGTT CGAACATCAC CGCCGAGGGC CCGCCGATCT ATCCGTTCAA GACCATCCTG
CCGATGGCCG GCGCGGTGCT GCTGCTGCAG GGCATCGTCG AGGTCATCCG CTGCATCGTC
TGCATCCGGC AGGGCGAGTG GCCCTCGCGT GAACACGACG TCGAAGAAGT CGACGTCGAC
AAGCTCAAGG AGATGGTGCA CGTGAAGGAT GAAGACATCG CCCGCCTCGA CCAGTACGTC
GTGCAGCAGG GGAGCACGAA ATGA
 
Protein sequence
MQKLLLTIDK ISTFIGQAFS WLIVALTLMI SWEVFSRYAL DNPHAWAFDA MIILYGTLFM 
MAGAYTLAKA GHVRGDVLYG FFEPRTQATI DLILYILFFM PGVFALTYAG YHFAAESWAI
LERSNITAEG PPIYPFKTIL PMAGAVLLLQ GIVEVIRCIV CIRQGEWPSR EHDVEEVDVD
KLKEMVHVKD EDIARLDQYV VQQGSTK