Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4220 |
Symbol | |
ID | 6163892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4731180 |
End bp | 4731803 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641666997 |
Product | tripartite ATP-independent periplasmic transporter DctQ |
Protein accession | YP_001793236 |
Protein GI | 171060887 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0174615 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAGC TGCTGCTGAC GATCGACAAG ATCAGCACCT TCATCGGCCA GGCGTTTTCC TGGCTGATCG TCGCGCTCAC GCTGATGATC TCGTGGGAGG TCTTCTCGCG TTATGCGCTC GACAACCCGC ACGCGTGGGC CTTCGACGCC ATGATCATCC TGTACGGCAC GCTGTTCATG ATGGCCGGCG CCTACACGCT GGCCAAGGCC GGCCACGTGC GCGGCGACGT GCTGTACGGC TTCTTCGAGC CGCGCACGCA GGCGACGATC GACCTGATCC TCTACATCCT CTTCTTCATG CCCGGCGTGT TTGCGCTGAC CTATGCCGGC TACCACTTCG CGGCCGAGTC GTGGGCCATC CTCGAGCGTT CGAACATCAC CGCCGAGGGC CCGCCGATCT ATCCGTTCAA GACCATCCTG CCGATGGCCG GCGCGGTGCT GCTGCTGCAG GGCATCGTCG AGGTCATCCG CTGCATCGTC TGCATCCGGC AGGGCGAGTG GCCCTCGCGT GAACACGACG TCGAAGAAGT CGACGTCGAC AAGCTCAAGG AGATGGTGCA CGTGAAGGAT GAAGACATCG CCCGCCTCGA CCAGTACGTC GTGCAGCAGG GGAGCACGAA ATGA
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Protein sequence | MQKLLLTIDK ISTFIGQAFS WLIVALTLMI SWEVFSRYAL DNPHAWAFDA MIILYGTLFM MAGAYTLAKA GHVRGDVLYG FFEPRTQATI DLILYILFFM PGVFALTYAG YHFAAESWAI LERSNITAEG PPIYPFKTIL PMAGAVLLLQ GIVEVIRCIV CIRQGEWPSR EHDVEEVDVD KLKEMVHVKD EDIARLDQYV VQQGSTK
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