Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4210 |
Symbol | |
ID | 6163802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4717920 |
End bp | 4721252 |
Gene Length | 3333 bp |
Protein Length | 1110 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641666987 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001793226 |
Protein GI | 171060877 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.000219546 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCTTGC ACACCTGGGT CACCCGCCTG ATCTGGCTGT GCATGGCGCC GCTGCTGCTG CTGGCGGCCT ACCTGGCGAT CGACCGCGTG CGCGGTGTCC AGGCCGAGCG GGACCTGGTG GCCGAGAACC TGTCGCAGGA GCTCGCCGCC TCGATCGACC AGGGCCTGCA GGCCCGCATC GGCGCGCTGC AGATGCTGGC GCAGTCGCCG CTGGCCGACG ACCCGTCGCG CTGGCGCGAG CTCTACCAGG AGGCGCAGGG TTTCCGGCAG AGCTTCGGCA GCCACGTGGT GCTGGCCGAC CGCTCGCTGC GGATGCGCTT CACGACCCGC TCGCCGTTCG GCGCCGAGCT GCCGATGCTG CCGCGCCCGA AGGGCCAGGC GGCCGCACCC AAGGCGCTCG AGACCGGGCT GCCGGCGGTC GGCGACACCT TCATCGGGCC GATCGCCAAG GCGCCGCTGG TCGCCATCGC GGTGCCGGCG CTGCGCGGCG GCCAGGTCAC CGCGCTGCTG CTGACCACCT TCGAGGCCAG CCAGTACCAG GCCCAGCTCG ATCAGGTCCG GCTGCCGGCG CACTGGTCGC TGTCGCTGCT CGACGGCAAG GGCGACGTCA TCGCCCGCCG CGCGCCGGCC GAGCCGCCGG CGCAGCGGGT GGTCGATGCC GAAGGCCGTT TTGCCGTGCG CTCGGCGGTG GCGCCGTGGT CGGTGGTGCT CGAGATCCCG CGCGACGTCT ACCGCGCGCC GCTGCAGGCC GCGGCCCTGA CGCTGGCGAT CGCGATCCTG GGCGCCAGCC TGGCCGGGGT GCTCGGCGGC ATGCTGGCCA GCCGCCGCCT GGGCCGGGCG GTCGATTCGC TGGCGCAGCC GCCGCAGCCG GGCACGCCGC CGTCGTCGAT CCGAGAGATC GCCGCGGCCC GGCAGCTGAT CGACGAGACC GCGCGCCGCA GCCAGGCCGC CCAGGACAGC CTGCGTGACA GCGAGCGGCG CTTTCGCCGG CTGTTCCAGG AGGCGCCGCT GCCGCTGGCG CTGGTCAGCC GCGACGCTCG CGTGACCGAC ATCAACCGCC GCTTCGTGCA GCTGTTCGGC TACACCCTGG CCGAGATCCC GACCCTCGCG CACTGGTGGC AGCTGGCCTA TCCGGATGCG ACCTACCGCG CCGCCGTGAT CGCGCGCTGG AACGCCGCGC GGGTCGCCGT GGCGCAGACC CGCGGCGACA TCGCGCCGCA GGAATACCAC GTCACCTGCC GCGACGGCAG CGTGCGCACC CTGCTGATCG CCGGCATCGA CCAGGACGAC GGCTTCATGG CCACGTTCTT CGACATCACC GAGATCCGGC GCGCCGAGCA GCACGTGCGC GCCCTCAATG CCGACCTCGA ACGCCGGGTC GCCGACCGCA CCGGCGAACT GCTGCAGGCG CGCGAGGCGG CCGAAGCGGC CAACCGCGCC AAGAGCGCCT TCCTGGCCAA CATGAGCCAC GAGATCCGCA CGCCGATGAA CGCCATCGTC GGGCTCGCCC ACCTGCTGCG CCGCGATGCG CACGAGCCGG TGGCGGCGCA GCGGCTGGGC CAGATGATCG ACGCGGCGGG CCACCTGCTG CAGGTCATCA ACGACATCCT CGACCTGTCG AAGATCGAGG CCGGCAAGCT CCAGCTCGAG CAGCTGCCGT TCTCGCTCCA GGCCCTGCTG GCGCGCAACT GCGCCCTGGT GGCCGATCGC GCACGCGCCA AGGGGCTGGC CGTGGCGATC GAGGTCGACG GCGTGCCCGA CGCCCTGTCC GGCGACCCGA CCCGCCTGTC GCAGGCCCTG CTCAACCTGC TAGGCAACGC CGTCAAGTTC ACCGAGCAGG GCTCGATCGT GTTGCGCGCC GAGTGCGTGG CGCGCGGCAC CGACGATCAC CTGACGGTGC GGTTCCGGGT GCGCGACACC GGCATCGGCA TCGCGCCCGA CAAGCTCGAC CAGCTGTTCG CGCCCTTCAT GCAGGCCGAC GCCTCGACCA CCCGCCGATT CGGCGGCACC GGCCTCGGTC TGGCCATCAC GCAGCGCCTG GCCGCGACGA TGGGCGGCGA GGTCGGCGTG CGCAGCGAGC CCGGCCGCGG CAGCGAGTTC TGGTTCACCG CGCAGCTGCG CGAGGGCGCC GCGGCCCGCC CGGCGGGCGC TGCCGTCGAA GCCCTCACCC ACCCCTTCGG CGACTCGTTC GCGGACCCCC GCGAGGCCCT GGAGCGCCTG CGTTCGTGTT GTGCGGGGGC GCGGCTGCTG CTGGTGGAGG ACAACCCCGT GAACCAGGAC GTCGCCCTCG AACTGCTGCG CGCCGCCGGC TTCGCGGTCG ACGTCGCCAG CAACGGCGTC GAGGCGCTGG CGCAGGTGCA CGGCCGCAGC CACGACCTGA TCCTGATGGA CATGCAGATG CCCGAGATGG ACGGCCTGGA GGCGACGCGC CTGATCCGCG CGCTGCCCGG ATGCGCCACC GTGCCGATCC TGGCCATGAC CGCCAACGCC TTCGGCGACG ACCGGGCCGC CTGCCTGGCC GCCGGCATGA ACGACCACAT CGCCAAGCCG GTCGATCCCG CGCACCTCTA CGCGGTGCTG CTGCGCTGGC TGTCCGGCGC GGCGGGCGGC CCGCCACAGG CTGTCGCACC AGGCGTCGCA GCCGCTGCTG CACCTGCTGT TGCACCGACC GCGACGCAGC CCGCCGCGGT CGAGCCGCCG CGCCACGCCG CCGTCGATGT CGACGATCTC GACGATCTCG ACGGCCTGCC TCGCATCCCC GGCCTCGATG CACGGCAGGC GATGAACTAC GTGCAGGGCC GCGTCGAGGT CTACCGGCGC GTGCTGCGGC AGTTCGCCTA CCACTACGGC GACGACTGGA CCGAGCTGGC GCAGCAGCTG GTGCACGGCG ACTTCAAGGC GCTCGGCCGC ACCGCCCACG CGCTCAAGAG CGCGGCCGAG TCGATCGGGG CCGGCCGTCT GGCGCAGCTG GCCGAGGCGC TCGAAGCCGC GGTGGCGTCG AACGCGTCCG CCGATGCCCT GGCCGTCGCC GCCGAGGCGA TGCACGAGGA GCTGGCCTTC CTGGTGGCCG GCATCCGCAC CAGCACGCTG GGCGACGAGA CGCTGCCCGC GCCGCTGGCC GGCACGGCGA TGTCGAGCCG CGATCTCGAC CGCCTCGAAG CCCTGCTCGC CGCCGGCGAC TACGAGGCGG TGGCGCTGTT CCGCGAGCTG CGCCTGCCGA TGCGCCAGCA GTTCAGCACC CCGCTGGGCG ACGTCGAATC GAGCCTGCGC ATCTTCGACT TCGACGCCGC GCTGGCGGCG CTGCGGGCAG TGCGCGCGGC CGGCCGGATC TGA
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Protein sequence | MSLHTWVTRL IWLCMAPLLL LAAYLAIDRV RGVQAERDLV AENLSQELAA SIDQGLQARI GALQMLAQSP LADDPSRWRE LYQEAQGFRQ SFGSHVVLAD RSLRMRFTTR SPFGAELPML PRPKGQAAAP KALETGLPAV GDTFIGPIAK APLVAIAVPA LRGGQVTALL LTTFEASQYQ AQLDQVRLPA HWSLSLLDGK GDVIARRAPA EPPAQRVVDA EGRFAVRSAV APWSVVLEIP RDVYRAPLQA AALTLAIAIL GASLAGVLGG MLASRRLGRA VDSLAQPPQP GTPPSSIREI AAARQLIDET ARRSQAAQDS LRDSERRFRR LFQEAPLPLA LVSRDARVTD INRRFVQLFG YTLAEIPTLA HWWQLAYPDA TYRAAVIARW NAARVAVAQT RGDIAPQEYH VTCRDGSVRT LLIAGIDQDD GFMATFFDIT EIRRAEQHVR ALNADLERRV ADRTGELLQA REAAEAANRA KSAFLANMSH EIRTPMNAIV GLAHLLRRDA HEPVAAQRLG QMIDAAGHLL QVINDILDLS KIEAGKLQLE QLPFSLQALL ARNCALVADR ARAKGLAVAI EVDGVPDALS GDPTRLSQAL LNLLGNAVKF TEQGSIVLRA ECVARGTDDH LTVRFRVRDT GIGIAPDKLD QLFAPFMQAD ASTTRRFGGT GLGLAITQRL AATMGGEVGV RSEPGRGSEF WFTAQLREGA AARPAGAAVE ALTHPFGDSF ADPREALERL RSCCAGARLL LVEDNPVNQD VALELLRAAG FAVDVASNGV EALAQVHGRS HDLILMDMQM PEMDGLEATR LIRALPGCAT VPILAMTANA FGDDRAACLA AGMNDHIAKP VDPAHLYAVL LRWLSGAAGG PPQAVAPGVA AAAAPAVAPT ATQPAAVEPP RHAAVDVDDL DDLDGLPRIP GLDARQAMNY VQGRVEVYRR VLRQFAYHYG DDWTELAQQL VHGDFKALGR TAHALKSAAE SIGAGRLAQL AEALEAAVAS NASADALAVA AEAMHEELAF LVAGIRTSTL GDETLPAPLA GTAMSSRDLD RLEALLAAGD YEAVALFREL RLPMRQQFST PLGDVESSLR IFDFDAALAA LRAVRAAGRI
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