Gene Lcho_4207 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4207 
Symbol 
ID6161899 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4715179 
End bp4716309 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content69% 
IMG OID641666984 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001793223 
Protein GI171060874 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000498045 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTCTTGA GCGAAGACCA CCGCGCCGTG CAGGACGCCG TGCGCGCCTA CGTGCAGGAC 
CAGATCGCCC CGCACGCTGC ACGCTGGGAC AAGGAGCACC ACTTCCCCGC CGAGCAACTC 
AAGGGCCTGG CCGCGCTCGG CTGCTACGGC GTGGCCGTGC CCGCCGAGTA CGACGGCGCC 
GGGCTCGACT ACCTGGCGCT GGCCATCATC CTGGAAGAAA TCGGCGCGGG CGACGGCGGC 
ACCTCCACCG TGGTCAGCGT CAACAACTGC CCGGTCTGCT CGATCCTGAT GGCGTTCGCG 
AACGAGGCGC AGAAGCAGCA GTTCCTGAAG CCGCTGGCGC GCGGCGAGAT GCTCGGCGCC 
TTCTGCCTGA CCGAGCCACA CGTCGGCTCC GAGGCCGGCG GGCTCAAGAC CACCGCCGTG 
CGCGATGGCG ATCACTACGT GCTCGACGGC GTCAAGCAGT TCATCACCAG CGGCCAGCAC 
GGCGACGTCG CGATCGTGAT GGCCGTGACC GACAAGGCCG CCGGCAAGCG TGGCATCAGC 
GCCTTCCTCG TGCCCACCTC GACGCCCGGC TACACCGTGG CGCGGCTCGA GGACAAGATG 
GGCCAGCACA GCAGCGACAC GGCGCAGATC AACTTCGACC AGTGTCGCAT CCCCGCCAGC 
TACCGGCTGG GCGAAGAAGG CCAGGGCCTG AAGATCGCGC TGTCGGGCCT GGAGGGCGGG 
CGCATCGGCA TCGCCAGCCA GAGCGTCGGC ATGGCGCGTG CAGCCTTCGA GGCGGCGCTG 
GCGTACAGCA AGGATCGGAT CGCCTTCGGC ACCGCCATCT TCAACCACCA GGCGGTGCAG 
TTCCGGCTGG CCGACATGGC GATGCAGATC GAAGCCGCGC GGCAGCTGAT CTGGCACGCC 
GCGTCACTCA AGGACGCCGG TCTGCCCTGC CTGAAAGAGG CCGCGATGGC CAAGCTGTTC 
GCCAGCGAGA TGGCCGAGAA GGTCTGCTCG GCGGCGATCC AGACCTTCGG CGGCTACGGC 
TACGTCAGCG ACTTCCCGGT CGAGCGCATC TACCGCGATG TGCGGGTGTG CCAGATCTAC 
GAGGGCACCA GCGACGTGCA GCGGATCCTG ATCGGGCGCG CGCTGGCGTG A
 
Protein sequence
MLLSEDHRAV QDAVRAYVQD QIAPHAARWD KEHHFPAEQL KGLAALGCYG VAVPAEYDGA 
GLDYLALAII LEEIGAGDGG TSTVVSVNNC PVCSILMAFA NEAQKQQFLK PLARGEMLGA 
FCLTEPHVGS EAGGLKTTAV RDGDHYVLDG VKQFITSGQH GDVAIVMAVT DKAAGKRGIS 
AFLVPTSTPG YTVARLEDKM GQHSSDTAQI NFDQCRIPAS YRLGEEGQGL KIALSGLEGG 
RIGIASQSVG MARAAFEAAL AYSKDRIAFG TAIFNHQAVQ FRLADMAMQI EAARQLIWHA 
ASLKDAGLPC LKEAAMAKLF ASEMAEKVCS AAIQTFGGYG YVSDFPVERI YRDVRVCQIY 
EGTSDVQRIL IGRALA