Gene Lcho_4198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4198 
Symbol 
ID6161383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4706951 
End bp4707562 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content72% 
IMG OID641666975 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_001793214 
Protein GI171060865 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0000025376 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGTTTGGCA TCGCAGACTT CGGCGCCTTC TGCGCCGCCA TCGTCGTCTT CCTCGCCCTG 
CCCGGGCCTG GCACCTTTGC GCTGCTGGGC GCCACCGGCC AGGGTGGCTT TCGCGGCGGC 
GCGGCCGCCA CCGCCGGGCT GATCGTCGGC GACCAGATCC TGCTGTGGCT GGCCGTGGCC 
GGTGTCGCGG CGCTGATGGC GGCCACGCCG TGGCTGTTCG ATCTGGTGCG CTGGGCCGGC 
GCCGCCTACC TGGCGTGGAT CGGCTTCAAG CTGCTGCTGG CGCGCCCGGG TGAGGACGCC 
AGCCCGGTGC GCATCACGCC CAGCCACTTC GCCCGCCAGG CGCTGCTGAT CACGCTGCTC 
AATCCGAAGG CGATCATCTT CTACATGGCG TTCTTCCCGC TGTTCATCGA CCCGGCCACG 
CACCGCGGCC TGCCGACGTT CGCCGCGATG GCGATCACGA TCGCGCTGAT CACCGCCGTC 
TGGTGCCTGA CGCTGTGCGC CTTTGCCGAG CGCATCGCCA GCCGCGTGCG CGCCCATCGG 
CGCCTCGGGC TGGCGCTGCA ACGCGCCGCC GGGCTGTGCC TGATCGGCTT CGGCCTGCGC 
ATGGTGCGCT GA
 
Protein sequence
MFGIADFGAF CAAIVVFLAL PGPGTFALLG ATGQGGFRGG AAATAGLIVG DQILLWLAVA 
GVAALMAATP WLFDLVRWAG AAYLAWIGFK LLLARPGEDA SPVRITPSHF ARQALLITLL 
NPKAIIFYMA FFPLFIDPAT HRGLPTFAAM AITIALITAV WCLTLCAFAE RIASRVRAHR 
RLGLALQRAA GLCLIGFGLR MVR