| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4164 |
|---|
| Symbol | |
|---|
| ID | 6162701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4665071 |
|---|
| End bp | 4666003 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641666941 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001793180 |
|---|
| Protein GI | 171060831 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACC GCCTGACCCA GATCGAAGCC TTCGTGGCCG TCGCCCAGAA GGGCAGCCTG
ACCGCCGCCG CGGCCGGCGA GGGCGTGGCG CCCGCGATGA TCGGCCGGCG CATCGACGCG
CTCGAAGCCC GCCTGGGCGT CAAGCTGATG CTGCGCACCA CCCGGCGCAT CAGCCTCACG
CACGAGGGCA GCGCCTTCCT GGAAGACTGC AACCGCATGC TCGCCGACCT GGCCAACGCC
GAAGCCAGCG TCAGCGCCGG CGGCGTCAAG GCCAGCGGCC TGATCCGCAT CACCGCGCCG
GGCGGGTTCG GGCGCCGCCA CGTGGCGCCG CTGGTGCCGC GTTTCATGGC GCTGCACCCG
GAGGTGCGCA TCTCGCTGAA CCTGTCCGAC CGCGTGATCG ACATGGTCAA CGAGAGCTAC
GACTGCGCCG TGCGCGTGGG CGATCTGCCC GACTCCAGCC TGATCTCGGT GCGGCTGGCC
GACAACCGCC GCCGCTGCGT CGCCGCGCCC GCCTACCTCG CGCGCGCCGG CATGCCCACG
CACCCGAACG AACTGATGCG CCACGAGTGC CTGACGCTCA GCTCCGAGGC CAGCCAGTCG
CGCGGCTGGG CCTTCACGGT CGACGGCGAG GTGGCGCACC TGCGCCCGCC CGGCCGGCTC
GACTGCACCG ACGGCCAGGT GCTGCACGCC TGGTGCGTGG CCGGCCTGGG CCTGGCCTGG
CGCAGCAGCT GGGAGGTCGA GGGCGACCTG CGCTCGGGCC GACTGGTCAG CGTGCTCGAC
ACCTTTGCCG CGCCGCCCAA CGGCATCTAC GCCGTGTTTG CGCACGCCAA GCACCTGCCG
CTGCGCGTGC GCCTGTGGAT CGACTTCCTC AAGCACAGCT ACGGCGCGCC GTCGTACTGG
GCGGCGGCGG CCGAGCGCCA GGACGGCCCC TGA
|
|---|
| Protein sequence | MADRLTQIEA FVAVAQKGSL TAAAAGEGVA PAMIGRRIDA LEARLGVKLM LRTTRRISLT
HEGSAFLEDC NRMLADLANA EASVSAGGVK ASGLIRITAP GGFGRRHVAP LVPRFMALHP
EVRISLNLSD RVIDMVNESY DCAVRVGDLP DSSLISVRLA DNRRRCVAAP AYLARAGMPT
HPNELMRHEC LTLSSEASQS RGWAFTVDGE VAHLRPPGRL DCTDGQVLHA WCVAGLGLAW
RSSWEVEGDL RSGRLVSVLD TFAAPPNGIY AVFAHAKHLP LRVRLWIDFL KHSYGAPSYW
AAAAERQDGP
|
|---|
| |