| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4091 |
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| Symbol | |
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| ID | 6160213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4587063 |
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| End bp | 4587569 |
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| Gene Length | 507 bp |
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| Protein Length | 168 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666869 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001793108 |
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| Protein GI | 171060759 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000140512 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCACCA GCAGCCAGAA ATTCATCGCC CGCAATCGCG CCCCGCGGGT GCAGATCGAA
TACGACGTCG AGACCTACGG CGCCGAGAAG AAGGTGCAGG TGCCGTTCGT GATGGGCGTG
CTGGCCGACC TGAGCGGCAA GCCGGCCGAG CCGCTGGCGC CGGTGGCGGA TCGCAAGTTC
CTCGAGATCG ACGTCGACAA CTTCAACTCG CGCATGAAGT CGATGAAGCC GCGGGTGGCC
TTCCAGGTCG CCAACGAGCT GACCGGCGAG GGCAACCTGG CGGTCGACAT CAGCTTCGAG
ACGCTCGACG ACTTCTCGCC CGCGGCGGTG GCGCGCAAGG TCGAGGGGCT GCGCCAGCTG
CTCGAGGCGC GCCAGCAGCT GTCGAACCTG ATCACCTACA TGGACGGCAA GACCGGCGCC
GAGGAGCTGC TGGCCAAGGT CATCAAGGAC CAGGCGCTGC TGCAGTCGCT GACCCAGGCG
GCCAAGCCGG CCGGCACCCC CGAATGA
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| Protein sequence | MATSSQKFIA RNRAPRVQIE YDVETYGAEK KVQVPFVMGV LADLSGKPAE PLAPVADRKF
LEIDVDNFNS RMKSMKPRVA FQVANELTGE GNLAVDISFE TLDDFSPAAV ARKVEGLRQL
LEARQQLSNL ITYMDGKTGA EELLAKVIKD QALLQSLTQA AKPAGTPE
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