Gene Lcho_4089 details

Gene Information

• Locus tag: Lcho_4089
• ID: 6160211
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4584916
• End bp: 4585401
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 641666867
• Product: hypothetical protein
• Protein accession: YP_001793106
• Protein GI: 171060757
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00000000825402
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCTGTAG ACATGTTCAT CAAGATCGGC GACATCAAGG GCGAGTCGAA AGACGACGCG 
CACAAGACCG AAATCGACGT GCTGGCCTGG AGCTGGGGCC TGAGCCAGAG CGGCTCGGCG 
CACATGGGCG GTGGCGCGGG TGCGGGCAAG GTCAGCGTGC AGGACATCTC GCTGACCAAG 
TACGTCGATT CGTCGTCCAC CGCGCTGATC GTGGCGGCCT GCAAGGGCAC CCACATCAAG 
CAGGCCACGC TGACCGTGCG CAAGGCCGGC GACACGCCGC TCGAATACAT CAAGATCACG 
CTCGACGAGG TGATGGTGTC GTCGCTGTCG ACCGGCGGCA GCGGTGGCGA GGACCGCCTG 
ACCGAGAACG TCACGCTGAA CTTCGCCAAG TTCAAGGTCG AATACACCAT CCAGGCCGAC 
ACCGGCGGCA AGGGCACCAC CAGCACAGCG GCCTGGGACA TCCCGGCCAA CAAGCCGGTG 
GGCTGA 

 

Protein sequence

MAVDMFIKIG DIKGESKDDA HKTEIDVLAW SWGLSQSGSA HMGGGAGAGK VSVQDISLTK 
YVDSSSTALI VAACKGTHIK QATLTVRKAG DTPLEYIKIT LDEVMVSSLS TGGSGGEDRL 
TENVTLNFAK FKVEYTIQAD TGGKGTTSTA AWDIPANKPV G