Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4087 |
Symbol | |
ID | 6160209 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4583770 |
End bp | 4584324 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666865 |
Product | type VI secretion system lysozyme-related protein |
Protein accession | YP_001793104 |
Protein GI | 171060755 |
COG category | [S] Function unknown |
COG ID | [COG3518] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03357] type VI secretion system lysozyme-related protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00000000692593 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCCTGC AACCCCTGCG CGAGCGCCTC CAGCCGGCCC TGCTCGACCG CCTGAGCGAC GACGATCCCG CCAGCGCGGT CGAGGCCGAC GAGCGCCGTT TCATGTCGAA GGCGCAGCTG CGTGCCGCGG TGCTGCGCGA CCTCGGCTGG CTGTTCAACG CGGTGCAGCC GCTCGGCGGC GGCGCGGCCG AGACCTGGCC GCAGGCCGGT GCGTCGGTGC TCAATTTCGG CCTGCCGCCG GTGTCGGGGC AGCTGGCGTC GAAGATCGAC GTGAGCCAGA TCGAGCGCGA GCTGCGCCGG GCCATCCTGC GCTACGAGCC GCGCATCCTC GAACACGACC TGCGCGTGCA GGCGATCGAA TCCGACAGCC TGCTCGACAG CCACAACATC ATCGAGTTCG AGATCAGCGG CTGGCTGTGG GCGCAGCCGG TGCCGCTGGA GCTGCTGCTG CGCACGCGCT TCGACCTCGA GGCCGGCCAG GTGGCGGTGC ACGAGCGCAG TGCCGTCAGC GTGTCGGCCG CTGCAGGCGC TGCGCCGCGG GAGGCTGCCC AATGA
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Protein sequence | MALQPLRERL QPALLDRLSD DDPASAVEAD ERRFMSKAQL RAAVLRDLGW LFNAVQPLGG GAAETWPQAG ASVLNFGLPP VSGQLASKID VSQIERELRR AILRYEPRIL EHDLRVQAIE SDSLLDSHNI IEFEISGWLW AQPVPLELLL RTRFDLEAGQ VAVHERSAVS VSAAAGAAPR EAAQ
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