Gene Lcho_4070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4070 
SymboltrkA 
ID6162156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4562267 
End bp4563682 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content70% 
IMG OID641666848 
Productpotassium transporter peripheral membrane component 
Protein accessionYP_001793087 
Protein GI171060738 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value1.01925e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACATCA TCATCCTGGG GGCCGGCCGC GTCGGGGAGA GCGTGGCCGA GAGCCTGGTC 
TCCGAGCGCA ACGACATCAC CGTGATCGAC ACCGATCCGG CCCGCCTGCG GCTGCTGCAG
GACCGGCTCG ACCTGCGCGG CGTGACCGGC AACGGCATCC AGCCCTCGGT GCTCGAAACC
GCCGGCGCGC GCGACGCCGA CATGCTGATC GCCTGCGCCC CGGCCGACGA GACCAACCTG
GTGGCCTGCA AGGTGGCGCA CGAGCGCTTC GGCATCCAGA CCCGCATCGC CCGCATCCGC
TCGCCCGAGT TCATGGCCGG CACCGACCTG CTCGGCACCG GCGGTTTCGC GGTCAACGAG
GTGATCTGCC CGGAAGAATC GGTCACCCGC TACATCCGCA AGCTGATCGA ATACCCCGAG
GCGCTGCAGG TGCTCGAGTT TGCCGACGGC GCGGCCAGCC TGATCGCGGT GCGTGCGGTC
AGCGGCGGGC CGATGGTGCG CCACATCATC TCGGAGCTGC CGCAGCTGGT GCCGGGCGTG
GCGATGCGCT TCGTGGCGAT CTACCGGCAG ACCGAAGACC ACGCCGACGA GCGCGTGGTG
TGCGACGGCC GCACCCGCAT CGAGCCGGGC GACGAGGTCT TCGTGCTCGC CGCCACCCGC
GACATCCGCC GCGTGCTCGA CGCGCTGCGC CGGCGCGACG AGCCGGTGCG CCGCGTCATG
ATCGCCGGCG GCGGCCGGGT CGGGCTGCGG CTGGCACGCG AGATCGCCGA CGACTGCCGC
ATCAAGCTGG TCGAGAGCGC CGCCGCGCGC TGCGAGTACC TCACCACCCA GGTCGCCGAC
ACCGTGCTGG TGCTGCACGG CGACTCGACC GACGAGGACC TGCTCGAACG CGAGCAGATC
GACGAGACCG ACCTGTTCGT CTCGCTCACC AGCGACGACG AGGACAACAT CATGGGCTGC
CTGCTGGCCA AGCGCATGGG CGCCAAGCGG GTGCTGGCGC TGATCAACCG GCGTGCCTAT
GCCGATCTGG TGCAGGGCAC GCAGATCGAC ATCGCGCTGT CGCCGGCGCA GACCGTGATC
GGCGAACTGC TTGCGCACGT GCGCCGCGGC GACATCGAGG CGGTCTACAG CCTGCGCCGC
GGCGCGGCCG AGGCGCTGGA GGCGGTGGCC CGCGGCGACC GCAAGACCTC GAAGGTGGTG
GGCCGGCGCA TCGACGAGAT CCGGCTGCCC AAGGGCGCCG AGATCGGCGC GCTGGTGCGC
GGCGAGCCCG GCGCGGACAA CGAGCGCGAG GTGATCATTC CGCACCACGA CACCGTGATC
GAGCAGAACG ACCACGTCAT CGTCTTCCTG CCGCGCAAGC GCATGGTGCG CGAGATCGAG
AAGCTCTTCC AGGTCAGTGC GACCTTCATG TTCTGA
 
Protein sequence
MNIIILGAGR VGESVAESLV SERNDITVID TDPARLRLLQ DRLDLRGVTG NGIQPSVLET 
AGARDADMLI ACAPADETNL VACKVAHERF GIQTRIARIR SPEFMAGTDL LGTGGFAVNE
VICPEESVTR YIRKLIEYPE ALQVLEFADG AASLIAVRAV SGGPMVRHII SELPQLVPGV
AMRFVAIYRQ TEDHADERVV CDGRTRIEPG DEVFVLAATR DIRRVLDALR RRDEPVRRVM
IAGGGRVGLR LAREIADDCR IKLVESAAAR CEYLTTQVAD TVLVLHGDST DEDLLEREQI
DETDLFVSLT SDDEDNIMGC LLAKRMGAKR VLALINRRAY ADLVQGTQID IALSPAQTVI
GELLAHVRRG DIEAVYSLRR GAAEALEAVA RGDRKTSKVV GRRIDEIRLP KGAEIGALVR
GEPGADNERE VIIPHHDTVI EQNDHVIVFL PRKRMVREIE KLFQVSATFM F