Gene Lcho_4069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4069 
Symbol 
ID6162155 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4558033 
End bp4562034 
Gene Length4002 bp 
Protein Length1333 aa 
Translation table11 
GC content72% 
IMG OID641666847 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001793086 
Protein GI171060737 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value2.02305e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATCTCC CGCAAGGATC TGAGAACCCG GCGACGCTGC GCGCGGCTTC GGCTGGCCCG 
TCGGCGCGGA CGCTGCTTCA TTGCGCCCTG GCGGTGCTGC TGTGCCTGGC TGCGCTGTGG
CTGCGCCAGG GTCTGGCCGT GACCTTCGGC GATCGGCCGC TGCTGATCCT GTTCATGTTC
CCGATCCTCC TCAGCGCGCT GCTGGGCGGG TTCCTGCCGG GGCTGGTGGC GACGGCGTCG
GCCGCGGCCT GCACCTACTT CTTCTTCATC CCGCCGGCCC AAAGCCTGGC CAGCGGTGCC
GCGTCGGACG TGCTGCAGTG GGGCATGCTG GTGGCCAGCG GCCTGCTGAC CAGCGCACTG
AGCCACGCCC TGCAGCGCAC CCGCCGGCGC GAGGCCGAGC AGCTGCGCCA GCTCGCCGCC
ACCCGGCAGA GCCTGACCGA ATCGGAGCGG CGTTTCCAGG CCGCCTTCGA GCAGGCGGCA
GTCGGCATCG CGCTGGTCGG GCCGGACGGC CGCTGGCTGC GGGTCAACCG CAAGCTGTGC
GAGATCGTCG GCTACGGCGC CGACGAACTG CTGGCGCGCA CCTTCCAGGA CATCACGCAT
CCGGACGACC TGCGAACCGA TCTCGACCAG GTGGGGCGGC TGCTGCGCGG CGAGATCTCG
ACCTACACGC TCGAGAAGCG CTATGTCCGC AAGGATGGCA GCCTGCTCTG GATCCAGCTC
ACGGTGTCGC TGGTGCGGCG CATCGACGGT GAGCCCGACC ATTTCATCTC GGTGGTCGAG
AACATCCAGG CGCGCAAGGC CGCCGAAGAA GAGCGCCGGC TGTTCAGCGA GGCGCTGCGG
CAGGCCTCGC AGCCGCTGCT GATGGCCGAT GCGCAGTTCC ACATCAGCTA CGTCAACCCG
GCGTTTTCGC AGCTGCTCGG CTACGCGCCG AGCGACCTCG CGGGCCGCCA CGTGAGCTGC
CTGACGCCGC CCGATCCCGC CGCCCTGCAG GCACAGGCCG AAGGCATCGT CGAACTCAAG
ACGCTCGGCC GGTTTTCGGG CCCGCTCGAC CGCCTGGCCT GCGACGGCAC GGTGATCCCG
CTGGCGGCCA ACATCGGGCC GGTGCGCGAC GCCCGCGGCG AGGTGGTCGC CTGGGTCGCC
AGCTACCTCG ACCTGCGGCC GCTGCGCGAG AAGGACAAGC TGCTGCGCAT GCTCGCGCTG
GCGATCGAGC AGAGCCCGGC GAACGTGGTC GTCACCGATC TGGAATCGAA GATCGAGTAC
GTCAACGACG CCCTGCTGCA CGACAGCGGC TACAGCCGCG CCGAGCTGCT CGGCACCAGT
GCCCGTTCGC TGTTGTCGCC GCAGACGACG CCCGAGCTGC TGCAGGGCAT CGGCGAGGCC
CTGGCACGCG ACCGGCGCTG GCGCGGCCAG CTGATCAACC GGCGCAAGGA AGGCAGCGAA
TACACCACCG CGGCGGTGGT CTCGGCGTTG CAGGACGAGC GCGGCCGCGT CACCCACTTC
GTGGCGGTGC AGCAGGACAT CACCGATCGC CTGCACGACG CCGCCGAGCT CGAGCGCTAC
CGCTGCCACC TCGAGGTGCT GGTGGCCGAG CGCACCCGCC AGCTCGAGGA GGTCAATCGC
TCGCTGAGCG AGCAGCAGCA GTTCGTGCGC AACGTCGCCG ACGCGGTGCC GGCGCTGGTG
GGCTATTTCG ACCCGCAGCT GTACTGCCGC TTCGCCAACG CGGCCTACCT CGAGTGGTGG
GGCCTGCGGC CCGACGAGGT GGTCGGACTG CATGCGCGCG AGCTGATCGG CGACGAGATG
TTCCGGCGCA ACGAGCCGTC CATGCGGGCG GCGCTGCGGG GCGAGTCGCC GCGCCTCCAG
CGCGCCCTGC CGCACACCGA CGGCAGCCTG CGCGAGACGC TGATCGCCTA CGTGCCCGAC
CGGCAGGACG GCCAGGTGCG CGGCTTCATC GTGGTGGTGT CCGACATCAC CGAGATCAAG
GTGGCCGAGC AGCAGATGGC CGCGCTCAAC GCCCAGCTGG CGGCGCGCGC GATCGAGGCC
GAGGGCGCCA CGCGCGCCAA GAGCGCCTTC CTGGCCAACA TGAGCCACGA GATCCGCACG
CCGATGAACG CGATCATCGG CCTCACCCAC CTGATGGCGC GCGACACCCG CGACTCGCTG
CAGCGCGAGC GGCTCGGCAA GATCGACAGC GCCGCCAAGC ACCTGCTGCA GATCATCAAC
GACGTGCTCG ACCTGTCCAA GATCGACGCC GGCAAGCTGG TGCTCGAGGA CACCGAGTTC
AACCTCGACG AGGTGCTGTC GCGGGCCTTC GAGCTGGTGG GCGAATCGGC CAACGAAAAA
GGCCTCGAGC TGGTGCTCGA CACCGACCGC CTGCCCAGCC ACCTGCGCGG CGACCCGACG
CGGCTGTCGC AGGCGCTGAT CAACCTGCTC GCCAATGCCG TCAAGTTCAC CCACGCCGGC
TGGGTGCGCC TGCGTGGCGA GCTGCTGGCC GAGGACCGCC AGCGCGTGCA GGTGCGCTTC
GAGGTGCAGG ACACCGGCGA GGGCATCGAG CCCGAGCGCT TCGGGTCGCT GTTCAACGCC
TTCGAGCAGG CCGACGCCTC GACCACCCGC CGCCACGGCG GCACCGGCCT GGGCCTGGCG
CTGACGCAGC ACCTGGTCAC GCTGATGGGC GGCGAGATGG GCGTGCGCAG CGAGCCGGGC
GTCGGCAGCA CCTTCTGGTT CACCGCCTGG CTGGGCCGCG CCGCCGAGGC CGGCGAGCGG
GCTTCGGCGG TCCCGCTGCA GGGCCTGCGG GCGCTGCTGG TCGACGACCT GCCCGAGGCG
CTGAGCGCCA TCGGCGACCG CCTGCAGCAT TTCGGCCTGC GGATCGATCC GCTCGACAGC
GGCACGGCGG CGCTGCAGCG CGTGCGCAGC GAGATCAGCG CCGGCCGGCC CTACGACGTG
TTCCTGATCG ACTGGCGCAT GGAGCCGCTC GACGGCATCG AGACCATGCG CCAGCTGCGC
GAGCTGCTGG GCGCGGGCAT GCCGCCGGCC ATCCTCGTCA CCGCCTTCAA CAACACCGCC
ATGTGGCAGC AGGCGCGCGG CGTGCAGGCC GACGCGGTGC TGGTCAAGCC GATCACGGCC
TCGGCGCTGC ACGACACGCT GATGCGCGTG CTGCGCAGCC GCAGCGCCAC ACGCAGCGCC
GAGCCCGCGC CGCCCGGCCA GGGCGAGGCC CAGCTGCTGC GCCGCCACGC CGGCCAGCGC
GTGCTGCTGG CCGAGGACAA CCCGATCAAC CAGGAGGTCG CCAACGAGCT GCTGCAGGGT
GTCGGGCTGG TGGTGGAGAC GGCGGTCGAC GGCGCCAGTG CGGTCGAGCT GGCGTGCTCG
CGTGCCTACG ACCTGATCCT GATGGACATG CAGATGCCGG AGATGGACGG CATCGCCGCC
ACCCGCGCGA TCCGCGCCCG GCTCGGCCGC GCCATCCCGA TCGTCGCGAT GACCGCCAAC
GCCTTCAGCG AAGACCGCCA GGCCTGCCTC GACGCCGGCA TGAACGACCA CGTCGCCAAG
CCGGTCGATC CCGGCACGCT CTACGCCACG CTGCTGCGCT GGCTGCCGCT GGTCAGGACA
CCCGCCGAAG CCGTGGCGTC ACCGCCGCCG CCGCGCCTGC CGCTGCAGCA GCGCCTGGAC
ACGGTCGAGG GCTTCGATCT GGCGCTGGGC CTGAACAACG TCGGCCGCCA GTTCTCGACC
CTGGTGCGCG TGCTCGGGCT GTTCGTCAAG CGCTACGGCG AGGGCGAGCC GGCCTTGCTC
GATGCCTCCG AGCCCGGCGC CGCGGCCCGC TGGGCGGCGG CCTGCCACTC GCTGCGCGGC
GCCAGCGGCA CGCTCGGTGC CCGCCGGCTG GTGCAGCACC TGGTGCAGTT CGAGCAGGAG
CTGCATTCCA CCGGCGACGT CGCCGCACTG GCGCCGCGCG CCCGCCAGCT CCACGAGGAG
CTGCTGGCGC TGGTGCAGGC GCTGCAGGCG GCGCTGGACT GA
 
Protein sequence
MDLPQGSENP ATLRAASAGP SARTLLHCAL AVLLCLAALW LRQGLAVTFG DRPLLILFMF 
PILLSALLGG FLPGLVATAS AAACTYFFFI PPAQSLASGA ASDVLQWGML VASGLLTSAL
SHALQRTRRR EAEQLRQLAA TRQSLTESER RFQAAFEQAA VGIALVGPDG RWLRVNRKLC
EIVGYGADEL LARTFQDITH PDDLRTDLDQ VGRLLRGEIS TYTLEKRYVR KDGSLLWIQL
TVSLVRRIDG EPDHFISVVE NIQARKAAEE ERRLFSEALR QASQPLLMAD AQFHISYVNP
AFSQLLGYAP SDLAGRHVSC LTPPDPAALQ AQAEGIVELK TLGRFSGPLD RLACDGTVIP
LAANIGPVRD ARGEVVAWVA SYLDLRPLRE KDKLLRMLAL AIEQSPANVV VTDLESKIEY
VNDALLHDSG YSRAELLGTS ARSLLSPQTT PELLQGIGEA LARDRRWRGQ LINRRKEGSE
YTTAAVVSAL QDERGRVTHF VAVQQDITDR LHDAAELERY RCHLEVLVAE RTRQLEEVNR
SLSEQQQFVR NVADAVPALV GYFDPQLYCR FANAAYLEWW GLRPDEVVGL HARELIGDEM
FRRNEPSMRA ALRGESPRLQ RALPHTDGSL RETLIAYVPD RQDGQVRGFI VVVSDITEIK
VAEQQMAALN AQLAARAIEA EGATRAKSAF LANMSHEIRT PMNAIIGLTH LMARDTRDSL
QRERLGKIDS AAKHLLQIIN DVLDLSKIDA GKLVLEDTEF NLDEVLSRAF ELVGESANEK
GLELVLDTDR LPSHLRGDPT RLSQALINLL ANAVKFTHAG WVRLRGELLA EDRQRVQVRF
EVQDTGEGIE PERFGSLFNA FEQADASTTR RHGGTGLGLA LTQHLVTLMG GEMGVRSEPG
VGSTFWFTAW LGRAAEAGER ASAVPLQGLR ALLVDDLPEA LSAIGDRLQH FGLRIDPLDS
GTAALQRVRS EISAGRPYDV FLIDWRMEPL DGIETMRQLR ELLGAGMPPA ILVTAFNNTA
MWQQARGVQA DAVLVKPITA SALHDTLMRV LRSRSATRSA EPAPPGQGEA QLLRRHAGQR
VLLAEDNPIN QEVANELLQG VGLVVETAVD GASAVELACS RAYDLILMDM QMPEMDGIAA
TRAIRARLGR AIPIVAMTAN AFSEDRQACL DAGMNDHVAK PVDPGTLYAT LLRWLPLVRT
PAEAVASPPP PRLPLQQRLD TVEGFDLALG LNNVGRQFST LVRVLGLFVK RYGEGEPALL
DASEPGAAAR WAAACHSLRG ASGTLGARRL VQHLVQFEQE LHSTGDVAAL APRARQLHEE
LLALVQALQA ALD