| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4057 |
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| Symbol | |
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| ID | 6162890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4543591 |
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| End bp | 4547253 |
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| Gene Length | 3663 bp |
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| Protein Length | 1220 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641666835 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001793074 |
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| Protein GI | 171060725 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000260588 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGACGC TGCTGGGCTG GATCTTCAAC CGCTGGACGC TCGCCGTCGT CGCGCTGCTG
GCGCTGTCGC TGCTGATCTG GATCGTCGGC CCGCTGATCG CGGTGGCCGA GGTGCGCCCG
CTCGACAGCA CGCGCTCGCG GCTGATGCTG ATCGGCTGCC TCGTGCTGGC GCTGCTGCTG
ATGGCGGCGT GGAGCGCCTG GCAGGCCCGC CGCGCCAACC GGTCGGTGGT CGAGCAGCTG
ATGAAGCCCG CCGCCGGCGG TGCGCCGGCC GGCAGCGAGT CACCCGACGT GGCCGCGATG
CGCCAGCGCT TCGAGCGCGC GCTGCAGGTG CTGCGCGAGG CGCGGTTCCC GTCGGCGTCG
ACCGCGGCCG GCGGCGCCCC GGTCGGTGCG ATCGACGCGC GTGGCAAACC CGCCGCGCCC
AAGCCCGGCC TGCTGGCGCG CCTGGGGCTG CAGAACCTGG GCGGGCGCTA CCTCTACCAG
CTGCCCTGGT ACCTGATCAT CGGCGCGCCC GGCTCGGGCA AGACCACCGC GCTGCGCAAC
GCCGGTCTGC AGTTCCCGCT GGCCGAGCTG ACCGGCGAAC ACCGCGTGCG CGGCGTCGGC
GGCACGCGCG ACTGCGACTG GTGGTTCACC GACCGCGCGG TGCTGATCGA CACCGCCGGC
CGCTTCACCA CGCAGGACAG CGACGCCGGG CGCGACCAGG GCGCGTGGAG CGGCTTCCTC
GGCCTGCTGC GCCAGTCGCG GCCGCGCCAG CCGATCAACG GCGTGCTCGT CACCGTGTCG
GTGCCCGACC TGCTCGGCCG CAGCGCCGCC GAGCGCGACG ACTACGCCGC TCGCGTGCGC
CTGCGCCTGC AGGAGCTGCA CAAGCAGCTG GGCGTGCGTT TCCCGGTCTA CCTGCTGGTC
ACCAAGGTCG ACCTGCTCAA CGGCTTCGGC GACTATTTCG CCACCCTCGA CAAGGACAGC
CGCGCCACGC CCTGGGGCAC CACCTTCACG CTGGCGCAGT CACGCAGCGG CGACCACACG
GCCCTGGCCC CCGAGCTGAA GGCGCTGACC CAGCGCCTGC AGGACGGCCT GGTCGAGCGC
CTGCAGGCCG AGACCGACCC GCAGCGGCGC GCCCGCATCT ACGGCTTTCC GCTGCAGTTC
GGCAGCCTGC ACGAGCCGCT CGACGCCTTC GTGCGCGACG CCTTCGCGCC CTCGCCGTTC
GAGCCGCCGA GCCTGCTGCG CGGCGTGTAC TTTGTCAGCG GCACGCAGGA AGGCACGCCG
ATCGACCGCC TGATGGGCTC GATCGCGCGC AGCTGGCAGC TCGAACGCGC GATCCTGCCG
CCGCAGGGCG CCAGCGCGCG CAGCTACTTC CTGGAGCGCC TGCTCGGCGA GGTGGTGTTC
GCCGAGGCCG GCCTGGCCGG CACCGATCCG CGCGGCGAAC GGCGCCGTCG CCTGATGCTG
GTGGGCGCCT ACGCCGCGCT CGGCCTGCTG ACGGCGGGCG CGCTGGCGGC CTGGGCGACC
AGCGCGGTCA ACAACCGCAA CTACGTCGAC GCCGTGCTGG CGCGGGTCGA CGAGGTGCGC
CGGCTGGTGC AGGCCACGCC CAACCGTGCC AGCCCCGACC TGCAGCCGCT GCTGCCGGCG
CTGGCCGCCA CCCGCCAGCT GGCGCAGGCC GGCTGGGGCG ACGCGGCGGT GCCGTGGTCG
CTCGGCTTCG GGCTGTTCCA GGGCGACAAG CTCGACGCCG CCTCGCGCAG CGCCTATCAG
CGCATGCTGG TCGACGCCGT GCTGCCGCGC CTGGCGCTGC GCATCGAGGA GCAGCTGCGC
CAGCGCGCCG ACGCGCCCGA GCTGCAGTAC GAATCGCTCA AGGCCTACCT GATGCTGCAC
GACCCGCAGC GCTTCGACGC CGACGCGCTG GCCGCGCTGG TGCGCGCCGA CTGGGCGCAG
AACCTGCCGC GCGAGGTCGG CACGGCCGAG CGCGAGCAGC TCGACCAGCA CCTCGACGCC
CTGCTCGCGC TCGGCCCCGC CGTCTCGCCG CTGCCGCAGG ACCAGGCGCT GGTGACGCAG
ACCCGCGCCC TGCTCGCCGC CGTGCCGCTG CCCCAGCGCA TCTACAACCG CCTGCGTCAC
CAGGGCCTGG GCGAGCAGGT GGCCGAGTTC ACCGCCGCCC GCGCCGGCGG GCCGGCCGCG
GCGCTGGTGT TCGCGCGCGC CAGCGGCGCC CCGCTGACGC GCGGCGTGCC CGGGCTCTAT
ACGCGTGACG GCTACCAGCA GGGCTTCCAG CGCAAGGTCG ACGCCGTCAC CCGCGAACTG
GCGGATGAAG AAACCTGGGT TCTTGGGAAC GCCGCCAATG GCGGCGGCGG CGCTGCGGGC
CAGGCCACCC GCCCGAGCGC CGCCACGCTG GCCGACGACG TGCGCCGCCT GTACCTGACC
GACTACGCCA ACACCTGGGA GGCCTTCATC GCCGACGTGC GCCTGCGCCC GACCCAGAGC
CTGGCCGAGC TGGTGCAGGT CACGCGCGTG CTGTCCGGCC CCGACAACCC GCTGGCCACG
CTGCTGAAGG CGGTGGTGCG CGAGACCACG CTGCTCGGCG GCGAGGAGCC CGGCGCCGTC
AAGGCCGCCG CCGACCGCGC GCGTGGTGCG GTGGCCGCGG TGCGCGAGGG CATCCGCGCG
CTCGGCGGCG ATGCGGCCGC CGCCGCGCTG CCCGCGCGCG GTGTGCCGCT CGAATCGATC
GTCGACGACC GCTTCGCGAT GCTGCGCCGC TACGTGCAGG CCGCGCCGGG TGCGCGCGCA
CCGATCGACG ACACCCTCGT GCTGCTCAAC GAGGTGCAGC TGCACCTGGC CAGCGTCGAG
CTGGCGGTGC GCAGCGCCAA CCCGCCGCCG CCGTCGGACC TGCCGGTGCG CCTGGGCGCC
GAGGGCGCAC GCTCGGCCGA GCCGGTGCGC AGCCTGCTCG GCACGCTGGG CCGCAGCAGC
GCCGGCTTCA CCGGGCTGAT GCAGCGCGAG GTGCTGTCGC GCGAGGTGCG CTCGATGGTG
GGCGACTTCT GCACGCAGGC CGTGGCCGGG CGCTACCCGC TCAGGAGCGG CTCGGCCACC
GACGTCACGC TGGCGGATTT CGGCCAGCTG TTCGGACCGG GCGGGCGCTT CGACCGGCTG
TTCCAGGAGA AGCTGGCCGC CCACGTCGAC ACCTCGGCGC GGCCGACCTG GCGCTTCCGC
GCCAACGGGC TGGGCGAGGA CGCCGGCACG CTGGCGCAGT TCCAGCGCGC GCAGGTCATC
CGCGACACCT TCTTCCCGGC CGGCGGCAAC ACGCCGCAGC TGCGGCTGGA GTTCAAGCCG
GTCGAGATGG ACGCCAGCAT CAGCCAGTTC GTGCTCGACA TCGACGGCCA GGTGGTGCGC
TACGCCCACG GCCCGCAGAT CCCGACCAGC GTGCAATGGC CCGGCCCGCG CGGCACCAAC
CAGGTGCGGC TGCAGCTCAG CCCCGCCGGC GCCAGCGGCA ACGGCCTGCT CAACGAAGGC
CCGTGGGCGC TGCTGCACCT GTTCGACCGC GTGCAGCTCG AACCCGGCCG CAGCGCCGAG
CGCTTTCGCG CCACCTTCGA GCTCGACGGC CGCAAGGCGG TGTTCGAGAT CACCGCCAGC
AGCGTGCGCA ACCCGCTGCG CCTGCGCGAG CTGGCCGAGT TCAGCTGCCC GAACGGCCTG
TGA
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| Protein sequence | MKTLLGWIFN RWTLAVVALL ALSLLIWIVG PLIAVAEVRP LDSTRSRLML IGCLVLALLL
MAAWSAWQAR RANRSVVEQL MKPAAGGAPA GSESPDVAAM RQRFERALQV LREARFPSAS
TAAGGAPVGA IDARGKPAAP KPGLLARLGL QNLGGRYLYQ LPWYLIIGAP GSGKTTALRN
AGLQFPLAEL TGEHRVRGVG GTRDCDWWFT DRAVLIDTAG RFTTQDSDAG RDQGAWSGFL
GLLRQSRPRQ PINGVLVTVS VPDLLGRSAA ERDDYAARVR LRLQELHKQL GVRFPVYLLV
TKVDLLNGFG DYFATLDKDS RATPWGTTFT LAQSRSGDHT ALAPELKALT QRLQDGLVER
LQAETDPQRR ARIYGFPLQF GSLHEPLDAF VRDAFAPSPF EPPSLLRGVY FVSGTQEGTP
IDRLMGSIAR SWQLERAILP PQGASARSYF LERLLGEVVF AEAGLAGTDP RGERRRRLML
VGAYAALGLL TAGALAAWAT SAVNNRNYVD AVLARVDEVR RLVQATPNRA SPDLQPLLPA
LAATRQLAQA GWGDAAVPWS LGFGLFQGDK LDAASRSAYQ RMLVDAVLPR LALRIEEQLR
QRADAPELQY ESLKAYLMLH DPQRFDADAL AALVRADWAQ NLPREVGTAE REQLDQHLDA
LLALGPAVSP LPQDQALVTQ TRALLAAVPL PQRIYNRLRH QGLGEQVAEF TAARAGGPAA
ALVFARASGA PLTRGVPGLY TRDGYQQGFQ RKVDAVTREL ADEETWVLGN AANGGGGAAG
QATRPSAATL ADDVRRLYLT DYANTWEAFI ADVRLRPTQS LAELVQVTRV LSGPDNPLAT
LLKAVVRETT LLGGEEPGAV KAAADRARGA VAAVREGIRA LGGDAAAAAL PARGVPLESI
VDDRFAMLRR YVQAAPGARA PIDDTLVLLN EVQLHLASVE LAVRSANPPP PSDLPVRLGA
EGARSAEPVR SLLGTLGRSS AGFTGLMQRE VLSREVRSMV GDFCTQAVAG RYPLRSGSAT
DVTLADFGQL FGPGGRFDRL FQEKLAAHVD TSARPTWRFR ANGLGEDAGT LAQFQRAQVI
RDTFFPAGGN TPQLRLEFKP VEMDASISQF VLDIDGQVVR YAHGPQIPTS VQWPGPRGTN
QVRLQLSPAG ASGNGLLNEG PWALLHLFDR VQLEPGRSAE RFRATFELDG RKAVFEITAS
SVRNPLRLRE LAEFSCPNGL
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