| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4055 |
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| Symbol | |
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| ID | 6162888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4540844 |
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| End bp | 4542181 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666833 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001793072 |
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| Protein GI | 171060723 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00000569036 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCTGC ATGACAAGGT CGCGTGGTCG CAGGGCATGT TCCTGCAGCC GCACCATTTC
CAGCAGGAAA CGCGTGCGCT CGAACACCTG ATCGACACCC GCCTGCGTGC CGCCGACGCG
CACGCCTGGG GCCACGCCGA GCTGGTGCTC GACGAATCGC TGCTCGCACT CGGCCGCGTC
GGCCTGGTGC GCGCGCGTGG CGTGCTGCCC GACGGCACGC CCTACGCGCT GCCCGATCAC
GACCCGCTGC CCGCCCCGCT CGAGGTGCCG GCCGACCTCA AGGGCGAGCG GGTCTGCCTG
GCCGCGCCCC TGGCGCGTGC GGGCGCCACC GATTTCGACC TCGGCCTCGA CGGCAGCGCC
GCCGACGCCG CGCGCTACGG CGTCACCGAG CTGCAGCTGC GCGACCAGAC CAACGCCACC
GACGAGCCGC AGACGATCCA GGTCGGCCGC CTGCGGCTGC GGCTGCTGCG CGAGCGCGAA
CTCGGCAACG GCTGGACGGC GCTGGGCGTG GCGCGCGTGA TCGAGCGCCG CGCCGACGCC
CAGGTGGTGC TCGACCGCGC CTACATCCCG CCGCAGACCC GGCTCGACGC CACCGAGCAC
CTGCACGCCT CGGCCGCGCT GCTGCACGGG CGGCTGCAGC AGTTCGCCCG CCTGCTGGCC
GAGCGCATGG GCAGCGCGGC GCACGGCGTC TCCGAGATCG CCGACTTCCT GCTGCTGATG
ACGCTCAACC GCAACGAGCC GCTGTTCCGC CAGTTCGCCG GCGGCCCGCA GGTGCACCCG
GCGCTGTTCC ACCGCGCCTG CCTGCAGCTG GCCGGCGAGC TCAGCAGCTT CGGCACCGAC
AGCCGCACGC CGCGCGAGTT CGCGCTCTAT CGGCACGACG ACCTGCAGGC CACCTTCGCG
ACGCTGATCG AGCAGCTGCG CGTGCAGCTG TCGGGCGTGC CGGTGCCACG CGCCACGCCG
ATCGAGCTGA CCGACCGCCA GCACGGCTTC CGCACCGCCG TGATCCGCGA CACCGAGCTG
CTGCGCGGCG CCGCCTTCGT GCTGGCGGTG CACGCGCAGC TGCCGGCCGA GCAGCTCAGC
CAGCGCTTCC TGGCGCACGC CAAGGTCGGC CCGGTCGAGC GCATCAAGGA GCTGGTCAGC
CTGGCGCTGC CCGGCATCGC GCTGCGCAGC CTGCCGGTGG CGCCGCGCCA GCTGCCGTTC
CACGCCGGCC ATCACTACTT CGAGGTGCAG CGCGACGGCG AGCTGTGGAA GCAGCTCGAA
CACAGCGGCA ACCTGGCGCT GCACGTGGCC GGCGACTTCC CCGGGCTCGA GCTGCAGCTG
TGGGCGATCC GGCCCTGA
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| Protein sequence | MTLHDKVAWS QGMFLQPHHF QQETRALEHL IDTRLRAADA HAWGHAELVL DESLLALGRV
GLVRARGVLP DGTPYALPDH DPLPAPLEVP ADLKGERVCL AAPLARAGAT DFDLGLDGSA
ADAARYGVTE LQLRDQTNAT DEPQTIQVGR LRLRLLRERE LGNGWTALGV ARVIERRADA
QVVLDRAYIP PQTRLDATEH LHASAALLHG RLQQFARLLA ERMGSAAHGV SEIADFLLLM
TLNRNEPLFR QFAGGPQVHP ALFHRACLQL AGELSSFGTD SRTPREFALY RHDDLQATFA
TLIEQLRVQL SGVPVPRATP IELTDRQHGF RTAVIRDTEL LRGAAFVLAV HAQLPAEQLS
QRFLAHAKVG PVERIKELVS LALPGIALRS LPVAPRQLPF HAGHHYFEVQ RDGELWKQLE
HSGNLALHVA GDFPGLELQL WAIRP
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