Gene Lcho_4054 details

Gene Information

• Locus tag: Lcho_4054
• ID: 6162887
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4540240
• End bp: 4540833
• Gene Length: 594 bp
• Protein Length: 197 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641666832
• Product: hypothetical protein
• Protein accession: YP_001793071
• Protein GI: 171060722
• COG category: [S] Function unknown
• COG ID: [COG3521] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03352] type VI secretion lipoprotein, VC_A0113 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 0.00000378046
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGACGGAGG CCCGCGTGAA GTCCGCACTG AAGTCGTCCC CGAGCTCGAT TCCTGCCGCT 
GCAGACAGCG CCCGAGACGC GGCCAGTCGT GCGCGCCGCA GCGTGCTGGC CGGCGCGGGC 
GCGCTGCTGC TGGCCGGCTG CTCGACCTCG GCCAAGGTGA TCAAGGCGCT GACCGCGCCC 
GAGCCCGAAG CCAAGCCGGA GCCCGAACCG ACCCGCATCG TCGGCGCGCT GGTCGCCAGC 
GCCGACATCA ACCCGGACCT GCGCAAGCGC GCCTCGCCGC TGCTGGTGCG GGTCTACGAG 
CTGAAGTCGG ACGCGGCCTT CAACAACGCC GACTTCATGG CGCTGTTCCA GCGCGACCAG 
GCCGAGCTGG CGGCCGACAT CGTGCTGCGC GAGGAGTTCA TCGTCCAGCC CGGCGAGCGC 
CGCGTGCTCG ACCGCGTGGC CGGCGAGCAG ACCCGCTTCC TGGCGGTCTT CGCGGCCTAT 
CGCGACATCG AGCGGGCCCG CTGGCGCGCC CTGGCGCCGG TGCGCAGCGC CGCCACCCAG 
ACGCTGCAGG TGCAGGTCGA CGCGTCCGCG GTCTCGATCA CCCCCGCCCG CTGA 

 

Protein sequence

MTEARVKSAL KSSPSSIPAA ADSARDAASR ARRSVLAGAG ALLLAGCSTS AKVIKALTAP 
EPEAKPEPEP TRIVGALVAS ADINPDLRKR ASPLLVRVYE LKSDAAFNNA DFMALFQRDQ 
AELAADIVLR EEFIVQPGER RVLDRVAGEQ TRFLAVFAAY RDIERARWRA LAPVRSAATQ 
TLQVQVDASA VSITPAR